Obox1 (Mus musculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMUSG00000054310 T212544_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Obox1
M00515_2.00		 Mus musculus
NTAATCYNNN
NNNRGATTAN		 PBM
Berger et al.(2008)
Obox1_3970		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Obox3
M00523_2.00 		Mus musculus
NWWATMN
NKATWWN		 PBM
Berger et al.(2008)
Obox3_3439 		0.855 0.930
Obox5
M00527_2.00 		Mus musculus
NTWATHNN
NNDATWAN		 PBM
Berger et al.(2008)
Obox5_2284 		0.855 0.912
Obox5
M00528_2.00 		Mus musculus
NWDATHNN
NNDATHWN		 PBM
Berger et al.(2008)
Obox5_3963 		0.855 0.912
Q8VHG7_MOUSE
M00529_2.00 		Mus musculus
WTAATCCH
DGGATTAW		 PBM
Berger et al.(2008)
Obox2_3438 		0.832 0.965
Obox6
M00490_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Obox6_3440 		0.689 0.579
NEMVEDRAFT_v1g113057
M02144_2.00 		Nematostella vectensis
NYTAATCCBN
NVGGATTARN		 PBM
Weirauch et al.(2014)
pTH6135 		0.617 0.386
Gsc
M00411_2.00 		Mus musculus
NNTAATYBN
NVRATTANN		 PBM
Berger et al.(2008)
Gsc_2327 		0.607 0.404
GSC
M03146_2.00 		Homo sapiens
NHTAATCCNH
DNGGATTADN		 SELEX
Jolma et al.(2013)
GSC_1 		0.607 0.404
GSC
M05134_2.00 		Homo sapiens
NTAATCCB
VGGATTAN		 SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX 		0.607 0.404
GSC
M05136_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX 		0.607 0.404
gsc
M09584_2.00 		Xenopus tropicalis
NTAATCYN
NRGATTAN		 Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576 		0.607 0.404
GSC
M05135_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX 		0.607 0.404
GSC
M05137_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX 		0.607 0.404
ceh-37
M00674_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10716 		0.604 0.404
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00515_2.00 Homeodomain 95 151

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000067691 Homeodomain 95 151
ENSMUSP00000133496 Homeodomain 95 151
ENSMUSP00000133504 Homeodomain 95 151
ENSMUSP00000134043 Homeodomain 95 151
ENSMUSP00000134688 Homeodomain 95 151
ENSMUSP00000138010 Homeodomain 95 151

Links

Other Homeodomain family TFs
Other Mus musculus TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006441 Ailuropoda melanoleuca ENSAMEG00000006441 I 0.607
ENSAMEG00000015207 Ailuropoda melanoleuca ENSAMEG00000015207 I 0.616
Alligator_sinensis_CCG013745.1 Alligator sinensis Alligator_sinensis_CCG013745.1 I 0.607
ANCCAN_08871 Ancylostoma caninum ANCCAN_08871 I 0.599
ANCCEY_05795 Ancylostoma ceylanicum ANCCEY_05795 I 0.599
ANCDUO_14286 Ancylostoma duodenale ANCDUO_14286 I 0.599
GSC Anolis carolinensis ENSACAG00000012996 I 0.607
Afo_R004609 Aptenodytes forsteri Afo_R004609 I 0.607
ENSAMXG00000010712 Astyanax mexicanus ENSAMXG00000010712 I 0.607
ENSP00000238558-D1 Bos grunniens ENSP00000238558-D1 I 0.607
GSC Bos taurus ENSBTAG00000010407 I 0.607
Brh_R013322 Buceros rhinoceros Brh_R013322 I 0.607
CBN01461 Caenorhabditis brenneri CBN01461 I 0.604
CBG16311 Caenorhabditis briggsae CBG16311 I 0.604
ceh-37 Caenorhabditis elegans WBGene00000458 D 0.604
CJA13871 Caenorhabditis japonica CJA13871 I 0.604
CRE07572 Caenorhabditis remanei CRE07572 I 0.604
LEUTX Callithrix jacchus ENSCJAG00000007650 I 0.630
GSC Callithrix jacchus ENSCJAG00000009866 I 0.607
ENSCJAG00000031515 Callithrix jacchus ENSCJAG00000031515 I 0.607
Aan_R000601 Calypte anna Aan_R000601 I 0.607
GSC Canis familiaris ENSCAFG00000017684 I 0.607
CapteG167382 Capitella teleta CapteG167382 I 0.601
GSC Cavia porcellus ENSCPOG00000024717 I 0.607
Cmyd_10021002 Chelonia mydas Cmyd_10021002 I 0.607
ENSCSAG00000010709 Chlorocebus sabaeus ENSCSAG00000010709 I 0.607
gsc Danio rerio ENSDARG00000059073 I 0.607
GSC Dasypus novemcinctus ENSDNOG00000009490 I 0.607
ENSDNOG00000034518 Dasypus novemcinctus ENSDNOG00000034518 I 0.617
ENSDNOG00000036918 Dasypus novemcinctus ENSDNOG00000036918 I 0.623
ENSECAG00000024741 Equus caballus ENSECAG00000024741 I 0.607
GSC Erinaceus europaeus ENSEEUG00000000502 I 0.607
ENSFCAG00000026142 Felis catus ENSFCAG00000026142 I 0.624
ENSFALG00000002510 Ficedula albicollis ENSFALG00000002510 I 0.607
ENSGMOG00000001349 Gadus morhua ENSGMOG00000001349 I 0.602
ENSGMOG00000006101 Gadus morhua ENSGMOG00000006101 I 0.607
GSC Gallus gallus ENSGALG00000010974 I 0.607
gsc Gasterosteus aculeatus ENSGACG00000013047 I 0.607
Gfo_R006720 Geospiza fortis Gfo_R006720 I 0.607
GSC Gorilla gorilla ENSGGOG00000007819 I 0.607
LEUTX Gorilla gorilla ENSGGOG00000027834 I 0.634
HCOI00475500 Haemonchus contortus HCOI00475500 I 0.601
HCOI01021200 Haemonchus contortus HCOI01021200 I 0.601
HPBE_0001132001 Heligmosomoides bakeri HPBE_0001132001 I 0.601
GSC Homo sapiens ENSG00000133937 D 0.607
TPRX1 Homo sapiens ENSG00000178928 I 0.668
XP_002157088.1 Hydra magnipapillata XP_002157088.1 I 0.604
HmN_000666600 Hymenolepis microstoma HmN_000666600 I 0.639
ENSSTOG00000016175 Ictidomys tridecemlineatus ENSSTOG00000016175 I 0.607
ENSLACG00000005216 Latimeria chalumnae ENSLACG00000005216 I 0.607
ENSLOCG00000008557 Lepisosteus oculatus ENSLOCG00000008557 I 0.607
LotgiG229731 Lottia gigantea LotgiG229731 I 0.600
GSC Loxodonta africana ENSLAFG00000021599 I 0.607
ENSP00000407583 Macaca fascicularis ENSP00000407583 I 0.634
ENSMMUG00000023066 Macaca mulatta ENSMMUG00000023066 I 0.607
ENSMEUG00000008495 Macropus eugenii ENSMEUG00000008495 I 0.607
GSC Meleagris gallopavo ENSMGAG00000013203 I 0.607
ENSMICG00000003307 Microcebus murinus ENSMICG00000003307 I 0.607
GSC Monodelphis domestica ENSMODG00000012586 I 0.607
ENSMPUG00000003137 Mustela putorius furo ENSMPUG00000003137 I 0.607
Gsc Mus musculus ENSMUSG00000021095 D 0.607
Obox6 Mus musculus ENSMUSG00000041583 D 0.689
Obox7 Mus musculus ENSMUSG00000055942 I 0.659
Obox3 Mus musculus ENSMUSG00000066772 D 0.855
Obox5 Mus musculus ENSMUSG00000074366 D 0.855
Q8VHG7_MOUSE Mus musculus ENSMUSG00000074369 D 0.832
Myotis_brandtii_RX1_10024726 Myotis brandtii Myotis_brandtii_RX1_10024726 I 0.613
GSC Myotis lucifugus ENSMLUG00000004290 I 0.607
NECAME_10077 Necator americanus NECAME_10077 I 0.599
NEMVEDRAFT_v1g113057 Nematostella vectensis NEMVEDRAFT_v1g113057 D 0.617
NEMVEDRAFT_v1g18446 Nematostella vectensis NEMVEDRAFT_v1g18446 I 0.603
ENSNLEG00000000972 Nomascus leucogenys ENSNLEG00000000972 I 0.674
ENSNLEG00000014279 Nomascus leucogenys ENSNLEG00000014279 I 0.616
ENSNLEG00000017307 Nomascus leucogenys ENSNLEG00000017307 I 0.607
GSC Ochotona princeps ENSOPRG00000002305 I 0.607
Ocbimv22019499m.g Octopus bimaculoides Ocbimv22019499m.g I 0.603
OESDEN_03496 Oesophagostomum dentatum OESDEN_03496 I 0.599
Ogr08956 Ophisaurus gracilis Ogr08956 I 0.607
ENSONIG00000010422 Oreochromis niloticus ENSONIG00000010422 I 0.607
ENSOANG00000012036 Ornithorhynchus anatinus ENSOANG00000012036 I 0.607
GSC Oryctolagus cuniculus ENSOCUG00000026355 I 0.607
ENSOGAG00000025340 Otolemur garnettii ENSOGAG00000025340 I 0.654
GSC Otolemur garnettii ENSOGAG00000028102 I 0.607
ENSOGAG00000028694 Otolemur garnettii ENSOGAG00000028694 I 0.667
ENSOARG00000002459 Ovis aries ENSOARG00000002459 I 0.619
ENSOARG00000015387 Ovis aries ENSOARG00000015387 I 0.607
GSC Pan troglodytes ENSPTRG00000006687 I 0.607
ENSPTRG00000011217 Pan troglodytes ENSPTRG00000011217 I 0.668
ENSPANG00000023077 Papio anubis ENSPANG00000023077 I 0.607
PTRK_0000465700 Parastrongyloides trichosuri PTRK_0000465700 I 0.600
ENSPSIG00000010793 Pelodiscus sinensis ENSPSIG00000010793 I 0.607
ENSPFOG00000008510 Poecilia formosa ENSPFOG00000008510 I 0.607
Pvit_04349 Pogona vitticeps Pvit_04349 I 0.607
Pvit_09824 Pogona vitticeps Pvit_09824 I 0.603
ENSPPYG00000006111 Pongo abelii ENSPPYG00000006111 I 0.607
ENSPPYG00000009977 Pongo abelii ENSPPYG00000009977 I 0.616
GSC Procavia capensis ENSPCAG00000006902 I 0.607
Gsc Rattus norvegicus ENSRNOG00000010605 I 0.607
LOC100361016 Rattus norvegicus ENSRNOG00000021972 I 0.704
RGD1564236 Rattus norvegicus ENSRNOG00000029702 I 0.624
Obox2 Rattus norvegicus ENSRNOG00000032891 I 0.698
AABR07002351.2 Rattus norvegicus ENSRNOG00000060136 I 0.700
RSKR_0000763400 Rhabditophanes kr3021 RSKR_0000763400 I 0.600
ENSSHAG00000014598 Sarcophilus harrisii ENSSHAG00000014598 I 0.607
A_06523 Schistosoma haematobium A_06523 I 0.624
ENSSARG00000006664 Sorex araneus ENSSARG00000006664 I 0.607
L596_g2971 Steinernema carpocapsae L596_g2971 I 0.615
L892_g12531 Steinernema scapterisci L892_g12531 I 0.615
SMAR013146 Strigamia maritima SMAR013146 I 0.605
SPAL_0000383900 Strongyloides papillosus SPAL_0000383900 I 0.600
SPAL_0000625000 Strongyloides papillosus SPAL_0000625000 I 0.599
SSTP_0000819600 Strongyloides stercoralis SSTP_0000819600 I 0.599
SSTP_0000876100 Strongyloides stercoralis SSTP_0000876100 I 0.600
SVE_0230200 Strongyloides venezuelensis SVE_0230200 I 0.599
SVE_0783800 Strongyloides venezuelensis SVE_0783800 I 0.600
SVUK_0001103601 Strongylus vulgaris SVUK_0001103601 I 0.599
GSC Sus scrofa ENSSSCG00000002490 I 0.607
TsM_001086400 Taenia solium TsM_001086400 I 0.604
ENSTGUG00000012655 Taeniopygia guttata ENSTGUG00000012655 I 0.607
gsc Takifugu rubripes ENSTRUG00000006728 I 0.607
TELCIR_16419 Teladorsagia circumcincta TELCIR_16419 I 0.601
ENSTNIG00000009078 Tetraodon nigroviridis ENSTNIG00000009078 I 0.602
GSC Tupaia belangeri ENSTBEG00000015016 I 0.607
GSC Tursiops truncatus ENSTTRG00000007961 I 0.607
gsc.L Xenopus laevis XB-GENE-6252605 I 0.607
gsc.S Xenopus laevis XB-GENE-864870 I 0.607
AAI21521 Xenopus tropicalis AAI21521 I 0.607
AAI57209 Xenopus tropicalis AAI57209 I 0.607
AAY96798 Xenopus tropicalis AAY96798 I 0.607
gsc Xenopus tropicalis XB-GENE-486771 D 0.607