six3 (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000004438 T213846_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005568 Homeodomain 169 225

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013374 Aedes aegypti AAEL013374 N
ANCCAN_18840 Ancylostoma caninum ANCCAN_18840 N
ANCDUO_15583 Ancylostoma duodenale ANCDUO_15583 N
AEPI009424 Anopheles epiroticus AEPI009424 N
AMAM014362 Anopheles maculatus AMAM014362 N
BGLB008222 Biomphalaria glabrata BGLB008222 N
BXY_1035000 Bursaphelenchus xylophilus BXY_1035000 N
BXY_1034900 Bursaphelenchus xylophilus BXY_1034900 I
CapteG78125 Capitella teleta CapteG78125 N
CLEC006296 Cimex lectularius CLEC006296 N
KGM_20032 Danaus plexippus KGM_20032 N
GF17175 Drosophila ananassae FBgn0094193 N
GF17143 Drosophila ananassae FBgn0094162 N
GH12158 Drosophila grimshawi FBgn0119637 N
GI10902 Drosophila mojavensis FBgn0133665 N
GJ18548 Drosophila virilis FBgn0205706 N
HCOI00051800 Haemonchus contortus HCOI00051800 N
HHAL001513-PA Halyomorpha halys HHAL001513-PA N
HMEL014400 Heliconius melpomene HMEL014400 N
HPBE_0000946001 Heligmosomoides bakeri HPBE_0000946001 N
Hba_07323 Heterorhabditis bacteriophora Hba_07323 N
ISCW018372 Ixodes scapularis ISCW018372 N
LCUP009247 Lucilia cuprina LCUP009247 N
MCINX008008 Melitaea cinxia MCINX008008 N
Minc05254 Meloidogyne incognita Minc05254 N
MDOA010514 Musca domestica MDOA010514 N
NECAME_09957 Necator americanus NECAME_09957 N
PTRK_0001274900 Parastrongyloides trichosuri PTRK_0001274900 N
RPRC004296 Rhodnius prolixus RPRC004296 N
nRc.2.0.1.g39124 Romanomermis culicivorax nRc.2.0.1.g39124 N
L893_g32898 Steinernema glaseri L893_g32898 N
SVUK_0000102101 Strongylus vulgaris SVUK_0000102101 N
TC001693 Tribolium castaneum TC001693 N
D917_04255 Trichinella nativa D917_04255 N
EFV52039 Trichinella spiralis EFV52039 N
D918_00954 Trichuris suis D918_00954 N
TTRE_0000574401 Trichuris trichiura TTRE_0000574401 N