ENSPSIG00000008635 (Pelodiscus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPSIG00000008635 T214908_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 1.000
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 1.000
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 1.000
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 1.000
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 1.000
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 1.000
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 1.000
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.945
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.945
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.945
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.945
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.945
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.945
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.945
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.982
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000009496 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Pelodiscus sinensis TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFUN001443 Anopheles funestus AFUN001443 I 0.000
BGLB006871 Biomphalaria glabrata BGLB006871 I 0.000
estExt_fgenesh2_pg.C_4350042 Branchiostoma floridae estExt_fgenesh2_pg.C_4350042 I 0.000
estExt_fgenesh2_pg.C_1140010 Branchiostoma floridae estExt_fgenesh2_pg.C_1140010 I 0.000
estExt_fgenesh2_pg.C_1140009 Branchiostoma floridae estExt_fgenesh2_pg.C_1140009 I 0.000
BXY_1725100 Bursaphelenchus xylophilus BXY_1725100 N 0.000
CapteG178526 Capitella teleta CapteG178526 I 0.000
YQE_10175 Dendroctonus ponderosae YQE_10175 I 0.000
GG24138 Drosophila erecta FBgn0116271 I 0.000
GH21247 Drosophila grimshawi FBgn0128709 I 0.000
Jra Drosophila melanogaster FBgn0001291 D 0.000
GI20534 Drosophila mojavensis FBgn0143270 I 0.000
GL17608 Drosophila persimilis FBgn0155211 I 0.000
GA30492 Drosophila pseudoobscura FBgn0265029 I 0.000
GM21184 Drosophila sechellia FBgn0176065 I 0.000
GD15385 Drosophila simulans FBgn0187053 I 0.000
GJ22384 Drosophila virilis FBgn0209497 I 0.000
GK21594 Drosophila willistoni FBgn0223586 I 0.000
GE19337 Drosophila yakuba FBgn0236685 I 0.000
ENSGMOG00000020384 Gadus morhua ENSGMOG00000020384 I 0.000
GPLIN_000092900 Globodera pallida GPLIN_000092900 N 0.000
GPLIN_000544200 Globodera pallida GPLIN_000544200 N 0.000
HelroG173259 Helobdella robusta HelroG173259 N 0.000
ISCW000545 Ixodes scapularis ISCW000545 I 0.000
ENSLACG00000006733 Latimeria chalumnae ENSLACG00000006733 I 0.000
ENSLOCG00000017968 Lepisosteus oculatus ENSLOCG00000017968 I 0.000
LDEC004906 Leptinotarsa decemlineata LDEC004906 I 0.000
LotgiG79422 Lottia gigantea LotgiG79422 I 0.000
LCUP014462 Lucilia cuprina LCUP014462 I 0.000
MDOA000479 Musca domestica MDOA000479 I 0.000
NV16554 Nasonia vitripennis NV16554 I 0.000
Ocbimv22005044m.g Octopus bimaculoides Ocbimv22005044m.g I 0.000
ENSONIG00000021047 Oreochromis niloticus ENSONIG00000021047 I 0.000
JUND Oryzias latipes ENSORLG00000008379 I 0.000
PTRK_0001642900 Parastrongyloides trichosuri PTRK_0001642900 N 0.000
PHUM379500 Pediculus humanus PHUM379500 I 0.000
ENSPFOG00000020956 Poecilia formosa ENSPFOG00000020956 I 0.000
RPRC014918 Rhodnius prolixus RPRC014918 I 0.000
nRc.2.0.1.g44757 Romanomermis culicivorax nRc.2.0.1.g44757 N 0.000
L596_g21776 Steinernema carpocapsae L596_g21776 N 0.000
L889_g29315 Steinernema feltiae L889_g29315 N 0.000
L893_g25726 Steinernema glaseri L893_g25726 N 0.000
L898_g22792 Steinernema monticolum L898_g22792 N 0.000
L892_g23905 Steinernema scapterisci L892_g23905 N 0.000
SPAL_0001132900 Strongyloides papillosus SPAL_0001132900 I 0.000
SSTP_0000472400 Strongyloides stercoralis SSTP_0000472400 I 0.000
JUND Takifugu rubripes ENSTRUG00000005979 I 0.000
JUND Tetraodon nigroviridis ENSTNIG00000010192 I 0.000
TC006814 Tribolium castaneum TC006814 I 0.000
XP_002940649 Xenopus tropicalis XP_002940649 I 0.000
ENSXMAG00000020084 Xiphophorus maculatus ENSXMAG00000020084 I 0.000