ENSPSIG00000016657 (Pelodiscus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPSIG00000016657 T214966_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000018774 Homeodomain 143 201

Links

Other Homeodomain family TFs
Other Pelodiscus sinensis TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17920 Aegilops tauschii F775_17920 I 0.000
F775_28545 Aegilops tauschii F775_28545 I 0.000
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.000
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.000
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.000
Aquca_014_00938 Aquilegia coerulea Aquca_014_00938 I 0.000
EIN3 Arabidopsis lyrata fgenesh2_kg.3__2304__AT3G20770.1 I 0.000
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.000
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.000
EIL3 Arabidopsis thaliana AT1G73730 D 0.000
EIL1 Arabidopsis thaliana AT2G27050 D 0.000
EIN3 Arabidopsis thaliana AT3G20770 D 0.000
Bostr.19424s0573 Boechera stricta Bostr.19424s0573 I 0.000
Bostr.29505s0037 Boechera stricta Bostr.29505s0037 I 0.000
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.000
BRADI1G63780 Brachypodium distachyon BRADI1G63780 I 0.000
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I 0.000
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I 0.000
Bo1g108650 Brassica oleracea Bo1g108650 I 0.000
Bo3g041690 Brassica oleracea Bo3g041690 I 0.000
Bo5g106280 Brassica oleracea Bo5g106280 I 0.000
Bo6g087550 Brassica oleracea Bo6g087550 I 0.000
Bo6g118030 Brassica oleracea Bo6g118030 I 0.000
Bra000528 Brassica rapa Bra000528 I 0.000
Bra003831 Brassica rapa Bra003831 I 0.000
Bra008110 Brassica rapa Bra008110 I 0.000
Bra015970 Brassica rapa Bra015970 I 0.000
PK01239.1 Cannabis sativa PK01239.1 I 0.000
PK13351.1 Cannabis sativa PK13351.1 I 0.000
PK19114.1 Cannabis sativa PK19114.1 I 0.000
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.000
Cagra.2243s0007 Capsella grandiflora Cagra.2243s0007 I 0.000
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.000
Carubv10013213m.g Capsella rubella Carubv10013213m.g I 0.000
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.000
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.000
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.000
Ca_02669 Cicer arietinum Ca_02669 I 0.000
Ca_07534 Cicer arietinum Ca_07534 I 0.000
Ca_10236 Cicer arietinum Ca_10236 I 0.000
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.000
Ciclev10000617m.g Citrus clementina Ciclev10000617m.g I 0.000
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.000
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.000
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.000
orange1.1g007174m.g Citrus sinensis orange1.1g007174m.g I 0.000
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.000
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.000
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.000
Cucsa.364340 Cucumis sativus Cucsa.364340 I 0.000
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.000
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.000
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.000
Thhalv10001938m.g Eutrema salsugineum Thhalv10001938m.g I 0.000
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.000
Thhalv10020292m.g Eutrema salsugineum Thhalv10020292m.g I 0.000
gene00379-v1.0-hybrid Fragaria vesca gene00379-v1.0-hybrid I 0.000
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.000
gene25474-v1.0-hybrid Fragaria vesca gene25474-v1.0-hybrid I 0.000
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.000
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.000
GLYMA13G03700 Glycine max GLYMA13G03700 I 0.000
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.000
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.000
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.000
GLYMA20G12250 Glycine max GLYMA20G12250 I 0.000
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.000
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.000
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.000
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.000
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I 0.000
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I 0.000
Gorai.013G266300 Gossypium raimondii Gorai.013G266300 I 0.000
MLOC_10315 Hordeum vulgare MLOC_10315 I 0.000
MLOC_10823 Hordeum vulgare MLOC_10823 I 0.000
MLOC_14619 Hordeum vulgare MLOC_14619 I 0.000
LPERR03G13760 Leersia perrieri LPERR03G13760 I 0.000
LPERR08G16890 Leersia perrieri LPERR08G16890 I 0.000
LPERR09G10870 Leersia perrieri LPERR09G10870 I 0.000
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.000
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.000
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.000
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.000
MDP0000202831 Malus domestica MDP0000202831 I 0.000
MDP0000212881 Malus domestica MDP0000212881 I 0.000
MDP0000306498 Malus domestica MDP0000306498 I 0.000
MDP0000490180 Malus domestica MDP0000490180 I 0.000
MDP0000562585 Malus domestica MDP0000562585 I 0.000
MDP0000564884 Malus domestica MDP0000564884 I 0.000
MDP0000565880 Malus domestica MDP0000565880 I 0.000
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.000
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I 0.000
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.000
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.000
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.000
MTR_5g087790 Medicago truncatula MTR_5g087790 I 0.000
mgf018950m Mimulus guttatus mgf018950m I 0.000
mgf020935m Mimulus guttatus mgf020935m I 0.000
GSMUA_Achr10G12800_001 Musa acuminata GSMUA_Achr10G12800_001 I 0.000
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I 0.000
GSMUA_Achr5G27670_001 Musa acuminata GSMUA_Achr5G27670_001 I 0.000
GSMUA_Achr6G15930_001 Musa acuminata GSMUA_Achr6G15930_001 I 0.000
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I 0.000
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I 0.000
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.000
OBART08G19960 Oryza barthii OBART08G19960 I 0.000
OBART09G14750 Oryza barthii OBART09G14750 I 0.000
OB08G26880 Oryza brachyantha OB08G26880 I 0.000
OB09G21280 Oryza brachyantha OB09G21280 I 0.000
ORGLA03G0150600 Oryza glaberrima ORGLA03G0150600 I 0.000
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I 0.000
OGLUM03G15860 Oryza glumaepatula OGLUM03G15860 I 0.000
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I 0.000
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I 0.000
BGIOSGA012535 Oryza indica BGIOSGA012535 I 0.000
BGIOSGA029545 Oryza indica BGIOSGA029545 I 0.000
OMERI03G14140 Oryza meridionalis OMERI03G14140 I 0.000
OMERI05G02190 Oryza meridionalis OMERI05G02190 I 0.000
OMERI08G16770 Oryza meridionalis OMERI08G16770 I 0.000
OMERI09G11470 Oryza meridionalis OMERI09G11470 I 0.000
ONIVA03G16680 Oryza nivara ONIVA03G16680 I 0.000
ONIVA08G17420 Oryza nivara ONIVA08G17420 I 0.000
ONIVA08G22530 Oryza nivara ONIVA08G22530 I 0.000
OPUNC03G15240 Oryza punctata OPUNC03G15240 I 0.000
OPUNC08G18080 Oryza punctata OPUNC08G18080 I 0.000
OPUNC09G13210 Oryza punctata OPUNC09G13210 I 0.000
ORUFI03G16290 Oryza rufipogon ORUFI03G16290 I 0.000
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I 0.000
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I 0.000
OS03G0324200 Oryza sativa OS03G0324200 I 0.000
OS03G0324300 Oryza sativa OS03G0324300 I 0.000
OS08G0508700 Oryza sativa OS08G0508700 I 0.000
OS09G0490200 Oryza sativa OS09G0490200 D 0.000
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I 0.000
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I 0.000
Pavir.Ia03450 Panicum virgatum Pavir.Ia03450 I 0.000
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I 0.000
Pavir.J02229 Panicum virgatum Pavir.J02229 I 0.000
Pavir.J14329 Panicum virgatum Pavir.J14329 I 0.000
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I 0.000
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.000
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.000
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.000
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I 0.000
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.000
POPTR_0004s20830 Populus trichocarpa POPTR_0004s20830 I 0.000
POPTR_0008s01200 Populus trichocarpa POPTR_0008s01200 I 0.000
POPTR_0009s16080 Populus trichocarpa POPTR_0009s16080 I 0.000
POPTR_0010s25370 Populus trichocarpa POPTR_0010s25370 I 0.000
Pm017009 Prunus mume Pm017009 I 0.000
Pm028171 Prunus mume Pm028171 I 0.000
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.000
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.000
29708.m000185 Ricinus communis 29708.m000185 I 0.000
30169.m006395 Ricinus communis 30169.m006395 I 0.000
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.000
SapurV1A.0036s0870 Salix purpurea SapurV1A.0036s0870 I 0.000
SapurV1A.0070s0670 Salix purpurea SapurV1A.0070s0670 I 0.000
SapurV1A.0561s0140 Salix purpurea SapurV1A.0561s0140 I 0.000
SapurV1A.0615s0150 Salix purpurea SapurV1A.0615s0150 I 0.000
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.000
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.000
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.000
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.000
Si013426m.g Setaria italica Si013426m.g I 0.000
Si029259m.g Setaria italica Si029259m.g I 0.000
Si034616m.g Setaria italica Si034616m.g I 0.000
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I 0.000
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.000
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.000
Solyc01g096810.2 Solanum lycopersicum Solyc01g096810.2 I 0.000
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.000
Solyc06g073730.1 Solanum lycopersicum Solyc06g073730.1 I 0.000
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.000
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.000
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I 0.000
PGSC0003DMG400027507 Solanum tuberosum PGSC0003DMG400027507 I 0.000
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.000
Sb01g036740 Sorghum bicolor Sb01g036740 I 0.000
Sb02g028390 Sorghum bicolor Sb02g028390 I 0.000
Sb07g027790 Sorghum bicolor Sb07g027790 I 0.000
TCM_040510 Theobroma cacao TCM_040510 I 0.000
TCM_042022 Theobroma cacao TCM_042022 I 0.000
Traes_4AS_2BDA1260C Triticum aestivum Traes_4AS_2BDA1260C I 0.000
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.000
Traes_4DL_C083C804E Triticum aestivum Traes_4DL_C083C804E I 0.000
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I 0.000
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I 0.000
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I 0.000
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I 0.000
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I 0.000
TRIUR3_28079 Triticum urartu TRIUR3_28079 I 0.000
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.000
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.000
AC234203.1_FG011 Zea mays AC234203.1_FG011 I 0.000
GRMZM2G006752 Zea mays GRMZM2G006752 I 0.000
GRMZM2G033570 Zea mays GRMZM2G033570 I 0.000
GRMZM2G317584 Zea mays GRMZM2G317584 I 0.000