Irx6 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000011037 T215390_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.867 1.000
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.832 0.930
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.832 0.930
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.832 0.930
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.824 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.824 0.895
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.824 0.895
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.790 0.912
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.860
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.860
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.860
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.860
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.860
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000014831 Homeodomain 144 203

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI48102 Acyrthosiphon pisum ACYPI48102 I 0.000
HR83 Aedes aegypti AAEL007350 I 0.000
ACAC_0001082701 Angiostrongylus cantonensis ACAC_0001082701 I 0.000
ACOC_0001282001 Angiostrongylus costaricensis ACOC_0001282001 I 0.000
AALB009657 Anopheles albimanus AALB009657 I 0.000
AARA006703 Anopheles arabiensis AARA006703 I 0.000
AATE004130 Anopheles atroparvus AATE004130 I 0.000
AEPI004731 Anopheles epiroticus AEPI004731 I 0.000
AFUN005541 Anopheles funestus AFUN005541 I 0.000
AGAP002234 Anopheles gambiae AGAP002234 I 0.000
AMAM005986 Anopheles maculatus AMAM005986 I 0.000
AMEC011506 Anopheles melas AMEC011506 I 0.000
AMEM012481 Anopheles merus AMEM012481 I 0.000
AMIN000835 Anopheles minimus AMIN000835 I 0.000
AQUA004261 Anopheles quadriannulatus AQUA004261 I 0.000
ASTEI03427 Anopheles stephensi ASTEI03427 I 0.000
BGIBMGA002000 Bombyx mori BGIBMGA002000 I 0.000
CBN10661 Caenorhabditis brenneri CBN10661 I 0.000
CBG09846 Caenorhabditis briggsae CBG09846 I 0.000
nhr-239 Caenorhabditis elegans WBGene00021848 I 0.000
CRE25188 Caenorhabditis remanei CRE25188 I 0.000
CapteG177303 Capitella teleta CapteG177303 I 0.000
CpipJ_CPIJ015933 Culex pipiens CpipJ_CPIJ015933 I 0.000
CPIJ015933 Culex quinquefasciatus CPIJ015933 I 0.000
KGM_21528 Danaus plexippus KGM_21528 I 0.000
DAPPUDRAFT_299738 Daphnia pulex DAPPUDRAFT_299738 I 0.000
GF16659 Drosophila ananassae FBgn0093680 I 0.000
GG13368 Drosophila erecta FBgn0105640 I 0.000
GH18089 Drosophila grimshawi FBgn0125557 I 0.000
Hr83 Drosophila melanogaster FBgn0037436 D 0.000
GL22067 Drosophila persimilis FBgn0159659 I 0.000
GA10225 Drosophila pseudoobscura FBgn0070284 I 0.000
GM10889 Drosophila sechellia FBgn0165835 I 0.000
GD19868 Drosophila simulans FBgn0191357 I 0.000
GJ22654 Drosophila virilis FBgn0209758 I 0.000
GK13826 Drosophila willistoni FBgn0215834 I 0.000
GE10213 Drosophila yakuba FBgn0228087 I 0.000
HPLM_0002159101 Haemonchus placei HPLM_0002159101 I 0.000
HHAL007294-PA Halyomorpha halys HHAL007294-PA I 0.000
Hsal_03084--XP_001121181.1_APIME Harpegnathos saltator Hsal_03084--XP_001121181.1_APIME I 0.000
HMEL012854 Heliconius melpomene HMEL012854 I 0.000
HelroG148423 Helobdella robusta HelroG148423 I 0.000
HelroG71774 Helobdella robusta HelroG71774 I 0.000
ISCW008659 Ixodes scapularis ISCW008659 I 0.000
LotgiG132791 Lottia gigantea LotgiG132791 I 0.000
LCUP007875 Lucilia cuprina LCUP007875 I 0.000
LLOJ000718 Lutzomyia longipalpis LLOJ000718 I 0.000
LLOJ001302 Lutzomyia longipalpis LLOJ001302 I 0.000
MDOA009347 Musca domestica MDOA009347 I 0.000
NV10871 Nasonia vitripennis NV10871 I 0.000
NEMVEDRAFT_v1g114090 Nematostella vectensis NEMVEDRAFT_v1g114090 I 0.000
Ocbimv22005486m.g Octopus bimaculoides Ocbimv22005486m.g I 0.000
PHUM331460 Pediculus humanus PHUM331460 I 0.000
PPAI010314 Phlebotomus papatasi PPAI010314 I 0.000
RSKR_0000433000 Rhabditophanes kr3021 RSKR_0000433000 I 0.000
RPRC007025 Rhodnius prolixus RPRC007025 I 0.000
nRc.2.0.1.g16033 Romanomermis culicivorax nRc.2.0.1.g16033 I 0.000
Sakowv30002570m.g Saccoglossus kowalevskii Sakowv30002570m.g I 0.000
SMAR006023 Strigamia maritima SMAR006023 I 0.000
SPU_012586 Strongylocentrotus purpuratus SPU_012586 I 0.000
tetur08g01210 Tetranychus urticae tetur08g01210 I 0.000
tetur01g07700 Tetranychus urticae tetur01g07700 I 0.000
TC010460 Tribolium castaneum TC010460 I 0.000
TMUE_s0114001400 Trichuris muris TMUE_s0114001400 I 0.000
D918_06154 Trichuris suis D918_06154 I 0.000
TTRE_0000057901 Trichuris trichiura TTRE_0000057901 I 0.000
L798_08383 Zootermopsis nevadensis L798_08383 I 0.000