Irx4 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000012720 T215398_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000016975 Homeodomain 145 203

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004106 Aedes aegypti AAEL004106 N 0.000
AALB009976 Anopheles albimanus AALB009976 N 0.000
AARA003424 Anopheles arabiensis AARA003424 N 0.000
AATE016142 Anopheles atroparvus AATE016142 N 0.000
ACHR001818 Anopheles christyi ACHR001818 N 0.000
ACOM026213 Anopheles coluzzii ACOM026213 N 0.000
ACUA024420 Anopheles culicifacies ACUA024420 N 0.000
ADIR000506 Anopheles dirus ADIR000506 N 0.000
AEPI002546 Anopheles epiroticus AEPI002546 N 0.000
AFAF000112 Anopheles farauti AFAF000112 N 0.000
AFUN006853 Anopheles funestus AFUN006853 N 0.000
AGAP012346 Anopheles gambiae AGAP012346 N 0.000
AMAM018365 Anopheles maculatus AMAM018365 N 0.000
AMEC009199 Anopheles melas AMEC009199 N 0.000
AMEM014753 Anopheles merus AMEM014753 N 0.000
AQUA003001 Anopheles quadriannulatus AQUA003001 N 0.000
ASIS014811 Anopheles sinensis ASIS014811 N 0.000
ASTEI02364 Anopheles stephensi ASTEI02364 N 0.000