irx2a (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000007607 T216679_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.866 0.982
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.866 0.982
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.866 0.982
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.866 0.982
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.866 0.982
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.866 0.982
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.814 0.912
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.814 0.912
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.814 0.912
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.781 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000018861 Homeodomain 142 201
ENSTRUP00000018862 Homeodomain 112 171
ENSTRUP00000018863 Homeodomain 112 171
ENSTRUP00000018864 Homeodomain 112 171
ENSTRUP00000018865 Homeodomain 112 171
ENSTRUP00000018866 Homeodomain 112 171

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

380 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25840 Aegilops tauschii F775_25840 I 0.000
F775_30853 Aegilops tauschii F775_30853 I 0.000
AMTR_s00077p00103580 Amborella trichopoda AMTR_s00077p00103580 I 0.000
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I 0.000
Aquca_013_00135 Aquilegia coerulea Aquca_013_00135 I 0.000
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I 0.000
Al_scaffold_0004_2305 Arabidopsis lyrata Al_scaffold_0004_2305 I 0.000
WRKY55 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001817 I 0.000
fgenesh1_pm.C_scaffold_4001818 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001818 I 0.000
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I 0.000
WRKY55 Arabidopsis thaliana AT2G40740 D 0.000
WRKY54 Arabidopsis thaliana AT2G40750 I 0.000
WRKY70 Arabidopsis thaliana AT3G56400 D 0.000
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I 0.000
Bostr.9345s0060 Boechera stricta Bostr.9345s0060 I 0.000
Bostr.9345s0061 Boechera stricta Bostr.9345s0061 I 0.000
BRADI3G34850 Brachypodium distachyon BRADI3G34850 I 0.000
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I 0.000
Bo00913s010 Brassica oleracea Bo00913s010 I 0.000
Bo01002s040 Brassica oleracea Bo01002s040 I 0.000
Bo3g035130 Brassica oleracea Bo3g035130 I 0.000
Bo3g035140 Brassica oleracea Bo3g035140 I 0.000
Bo4g012750 Brassica oleracea Bo4g012750 I 0.000
Bo4g190380 Brassica oleracea Bo4g190380 I 0.000
Bo4g190390 Brassica oleracea Bo4g190390 I 0.000
Bo6g071110 Brassica oleracea Bo6g071110 I 0.000
Bo7g109140 Brassica oleracea Bo7g109140 I 0.000
Bo8g090820 Brassica oleracea Bo8g090820 I 0.000
Bra000202 Brassica rapa Bra000202 I 0.000
Bra000203 Brassica rapa Bra000203 I 0.000
Bra002421 Brassica rapa Bra002421 I 0.000
Bra003239 Brassica rapa Bra003239 I 0.000
Bra004586 Brassica rapa Bra004586 I 0.000
Bra007243 Brassica rapa Bra007243 I 0.000
Bra013732 Brassica rapa Bra013732 I 0.000
Bra014692 Brassica rapa Bra014692 I 0.000
Bra014693 Brassica rapa Bra014693 I 0.000
Bra016974 Brassica rapa Bra016974 I 0.000
Bra016975 Brassica rapa Bra016975 I 0.000
Bra019265 Brassica rapa Bra019265 I 0.000
PK03324.1 Cannabis sativa PK03324.1 I 0.000
PK21378.1 Cannabis sativa PK21378.1 I 0.000
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I 0.000
Cagra.1226s0044 Capsella grandiflora Cagra.1226s0044 I 0.000
Cagra.1642s0038 Capsella grandiflora Cagra.1642s0038 I 0.000
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I 0.000
Carubv10006884m.g Capsella rubella Carubv10006884m.g I 0.000
Carubv10017349m.g Capsella rubella Carubv10017349m.g I 0.000
Carubv10023773m.g Capsella rubella Carubv10023773m.g I 0.000
Carubv10024972m.g Capsella rubella Carubv10024972m.g I 0.000
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I 0.000
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.000
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.000
Ca_04100 Cicer arietinum Ca_04100 I 0.000
Ca_09495 Cicer arietinum Ca_09495 I 0.000
Ca_12915 Cicer arietinum Ca_12915 I 0.000
Ca_18932 Cicer arietinum Ca_18932 I 0.000
Cla007424 Citrullus lanatus Cla007424 I 0.000
Cla015244 Citrullus lanatus Cla015244 I 0.000
Cla018337 Citrullus lanatus Cla018337 I 0.000
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.000
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.000
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I 0.000
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I 0.000
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.000
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.000
Cucsa.078810 Cucumis sativus Cucsa.078810 I 0.000
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.000
Eucgr.G03144 Eucalyptus grandis Eucgr.G03144 I 0.000
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.000
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I 0.000
Eucgr.J00107 Eucalyptus grandis Eucgr.J00107 I 0.000
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.000
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I 0.000
Thhalv10017926m.g Eutrema salsugineum Thhalv10017926m.g I 0.000
Thhalv10025724m.g Eutrema salsugineum Thhalv10025724m.g I 0.000
gene13546-v1.0-hybrid Fragaria vesca gene13546-v1.0-hybrid I 0.000
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I 0.000
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I 0.000
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I 0.000
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.000
GLYMA04G40130 Glycine max GLYMA04G40130 I 0.000
GLYMA05G29921 Glycine max GLYMA05G29921 I 0.000
GLYMA06G14720 Glycine max GLYMA06G14720 I 0.000
GLYMA09G41050 Glycine max GLYMA09G41050 I 0.000
GLYMA13G34240 Glycine max GLYMA13G34240 I 0.000
GLYMA13G34251 Glycine max GLYMA13G34251 I 0.000
GLYMA13G34261 Glycine max GLYMA13G34261 I 0.000
GLYMA13G34281 Glycine max GLYMA13G34281 I 0.000
GLYMA14G36430 Glycine max GLYMA14G36430 I 0.000
GLYMA16G34590 Glycine max GLYMA16G34590 I 0.000
GLYMA18G44560 Glycine max GLYMA18G44560 I 0.000
GLYMA19G44380 Glycine max GLYMA19G44380 I 0.000
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.000
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I 0.000
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I 0.000
MLOC_45055 Hordeum vulgare MLOC_45055 I 0.000
MLOC_71897 Hordeum vulgare MLOC_71897 I 0.000
LPERR03G14340 Leersia perrieri LPERR03G14340 I 0.000
LPERR08G11030 Leersia perrieri LPERR08G11030 I 0.000
LPERR09G04330 Leersia perrieri LPERR09G04330 I 0.000
Lus10012870.g Linum usitatissimum Lus10012870.g I 0.000
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.000
Lus10025133.g Linum usitatissimum Lus10025133.g I 0.000
Lus10025216.g Linum usitatissimum Lus10025216.g I 0.000
Lus10029021.g Linum usitatissimum Lus10029021.g I 0.000
Lus10030517.g Linum usitatissimum Lus10030517.g I 0.000
Lus10034244.g Linum usitatissimum Lus10034244.g I 0.000
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I 0.000
LjT41F16.60.nd Lotus japonicus LjT41F16.60.nd I 0.000
MDP0000175240 Malus domestica MDP0000175240 I 0.000
MDP0000578301 Malus domestica MDP0000578301 I 0.000
MDP0000754989 Malus domestica MDP0000754989 I 0.000
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.000
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.000
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.000
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I 0.000
cassava7221.valid.m1 Manihot esculenta cassava7221.valid.m1 I 0.000
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I 0.000
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I 0.000
MTR_0002s1250 Medicago truncatula MTR_0002s1250 I 0.000
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.000
MTR_2g075680 Medicago truncatula MTR_2g075680 I 0.000
MTR_2g075690 Medicago truncatula MTR_2g075690 I 0.000
MTR_2g075700 Medicago truncatula MTR_2g075700 I 0.000
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.000
MTR_3g093830 Medicago truncatula MTR_3g093830 I 0.000
MTR_5g067700 Medicago truncatula MTR_5g067700 I 0.000
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.000
MTR_7g073430 Medicago truncatula MTR_7g073430 I 0.000
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.000
MTR_8g027860 Medicago truncatula MTR_8g027860 I 0.000
MTR_8g032510 Medicago truncatula MTR_8g032510 N 0.000
mgf002542m Mimulus guttatus mgf002542m I 0.000
mgf009193m Mimulus guttatus mgf009193m I 0.000
GSMUA_Achr8G01730_001 Musa acuminata GSMUA_Achr8G01730_001 I 0.000
GSMUA_Achr9G04830_001 Musa acuminata GSMUA_Achr9G04830_001 I 0.000
OBART09G06020 Oryza barthii OBART09G06020 I 0.000
OB09G14040 Oryza brachyantha OB09G14040 I 0.000
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I 0.000
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I 0.000
OGLUM09G06630 Oryza glumaepatula OGLUM09G06630 I 0.000
BGIOSGA030535 Oryza indica BGIOSGA030535 I 0.000
BGIOSGA040489 Oryza indica BGIOSGA040489 I 0.000
OMERI08G11390 Oryza meridionalis OMERI08G11390 I 0.000
OMERI09G04750 Oryza meridionalis OMERI09G04750 I 0.000
ONIVA08G13920 Oryza nivara ONIVA08G13920 I 0.000
ONIVA09G05410 Oryza nivara ONIVA09G05410 I 0.000
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I 0.000
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I 0.000
OS08G0386200 Oryza sativa OS08G0386200 I 0.000
OS09G0334500 Oryza sativa OS09G0334500 I 0.000
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.000
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.000
Pavir.Fa01520 Panicum virgatum Pavir.Fa01520 I 0.000
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.000
Pavir.J37854 Panicum virgatum Pavir.J37854 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I 0.000
PDK_20s1521921g002 Phoenix dactylifera PDK_20s1521921g002 I 0.000
POPTR_0002s17010 Populus trichocarpa POPTR_0002s17010 I 0.000
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I 0.000
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.000
Pm003013 Prunus mume Pm003013 I 0.000
Pm003014 Prunus mume Pm003014 I 0.000
Pm003015 Prunus mume Pm003015 I 0.000
Pm019286 Prunus mume Pm019286 I 0.000
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.000
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I 0.000
PRUPE_ppa026125mg Prunus persica PRUPE_ppa026125mg I 0.000
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I 0.000
29729.m002369 Ricinus communis 29729.m002369 I 0.000
29915.m000479 Ricinus communis 29915.m000479 I 0.000
30174.m008651 Ricinus communis 30174.m008651 I 0.000
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.000
SapurV1A.0190s0060 Salix purpurea SapurV1A.0190s0060 I 0.000
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.000
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.000
SapurV1A.2295s0010 Salix purpurea SapurV1A.2295s0010 I 0.000
SELMODRAFT_113487 Selaginella moellendorffii SELMODRAFT_113487 I 0.000
SELMODRAFT_29692 Selaginella moellendorffii SELMODRAFT_29692 I 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Si015433m.g Setaria italica Si015433m.g I 0.000
Si030528m.g Setaria italica Si030528m.g I 0.000
Si030531m.g Setaria italica Si030531m.g I 0.000
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I 0.000
Solyc05g050330.2 Solanum lycopersicum Solyc05g050330.2 I 0.000
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I 0.000
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.000
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I 0.000
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.000
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I 0.000
PGSC0003DMG402033880 Solanum tuberosum PGSC0003DMG402033880 N 0.000
Sb02g022290 Sorghum bicolor Sb02g022290 I 0.000
Sb07g019400 Sorghum bicolor Sb07g019400 I 0.000
TCM_006103 Theobroma cacao TCM_006103 I 0.000
TCM_006109 Theobroma cacao TCM_006109 I 0.000
TCM_006116 Theobroma cacao TCM_006116 I 0.000
TCM_019689 Theobroma cacao TCM_019689 I 0.000
TCM_045556 Theobroma cacao TCM_045556 I 0.000
Traes_2AS_6269D889E Triticum aestivum Traes_2AS_6269D889E I 0.000
Traes_2BS_B65714572 Triticum aestivum Traes_2BS_B65714572 I 0.000
Traes_5BL_0A3D332A8 Triticum aestivum Traes_5BL_0A3D332A8 I 0.000
Traes_5DL_C93641E43 Triticum aestivum Traes_5DL_C93641E43 I 0.000
TRIUR3_30416 Triticum urartu TRIUR3_30416 I 0.000
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.000
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I 0.000
AC205562.3_FG002 Zea mays AC205562.3_FG002 I 0.000
GRMZM2G025895 Zea mays GRMZM2G025895 I 0.000
GRMZM2G061408 Zea mays GRMZM2G061408 I 0.000
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.000
GRMZM2G324999 Zea mays GRMZM2G324999 I 0.000