irx5b (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000012894 T216758_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.825 0.930
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.825 0.930
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.825 0.930
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.825 0.930
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.825 0.930
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.825 0.930
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.804 0.860
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.781 0.895
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.781 0.895
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.781 0.895
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.773 0.860
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.773 0.860
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.773 0.860
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.772 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000032664 Homeodomain 107 166
ENSTRUP00000032665 Homeodomain 107 166
ENSTRUP00000032666 Homeodomain 107 166
ENSTRUP00000032667 Homeodomain 107 166

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

388 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI007949 Acyrthosiphon pisum ACYPI007949 N 0.000
AAEL011380 Aedes aegypti AAEL011380 N 0.000
AALB006743 Anopheles albimanus AALB006743 N 0.000
AARA010318 Anopheles arabiensis AARA010318 N 0.000
AATE018776 Anopheles atroparvus AATE018776 N 0.000
ACUA021022 Anopheles culicifacies ACUA021022 N 0.000
ADAC001494 Anopheles darlingi ADAC001494 N 0.000
ADIR011701 Anopheles dirus ADIR011701 N 0.000
AEPI002924 Anopheles epiroticus AEPI002924 N 0.000
AFAF003948 Anopheles farauti AFAF003948 N 0.000
AFUN010134 Anopheles funestus AFUN010134 N 0.000
AGAP000005 Anopheles gambiae AGAP000005 N 0.000
AMAM015540 Anopheles maculatus AMAM015540 N 0.000
AMEC021909 Anopheles melas AMEC021909 N 0.000
AMEM017336 Anopheles merus AMEM017336 N 0.000
AMIN005344 Anopheles minimus AMIN005344 N 0.000
ASIS000124 Anopheles sinensis ASIS000124 N 0.000
ACEP16613 Atta cephalotes ACEP16613 N 0.000
fgenesh2_pm.scaffold_24000033 Branchiostoma floridae fgenesh2_pm.scaffold_24000033 N 0.000
Cflo_05895--XP_001121384.1_APIME Camponotus floridanus Cflo_05895--XP_001121384.1_APIME N 0.000
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.000
csin110255 Clonorchis sinensis csin110255 N 0.000
CpipJ_CPIJ014043 Culex pipiens CpipJ_CPIJ014043 N 0.000
CPIJ014043 Culex quinquefasciatus CPIJ014043 N 0.000
DAPPUDRAFT_232871 Daphnia pulex DAPPUDRAFT_232871 N 0.000
DAPPUDRAFT_306496 Daphnia pulex DAPPUDRAFT_306496 N 0.000
DILT_0000548601 Diphyllobothrium latum DILT_0000548601 N 0.000
DILT_0001497901 Diphyllobothrium latum DILT_0001497901 N 0.000
GF19115 Drosophila ananassae FBgn0096126 N 0.000
GG17955 Drosophila erecta FBgn0110175 N 0.000
GH12282 Drosophila grimshawi FBgn0119761 N 0.000
Dsp1 Drosophila melanogaster FBgn0011764 N 0.000
GI10980 Drosophila mojavensis FBgn0133743 N 0.000
GA11488 Drosophila pseudoobscura FBgn0071539 N 0.000
GD17278 Drosophila simulans FBgn0188840 N 0.000
GJ19445 Drosophila virilis FBgn0206588 N 0.000
GK25058 Drosophila willistoni FBgn0227017 N 0.000
GE17263 Drosophila yakuba FBgn0234741 N 0.000
ECANG7_05481 Echinococcus canadensis ECANG7_05481 N 0.000
ECANG7_02036 Echinococcus canadensis ECANG7_02036 N 0.000
EmuJ_001049000 Echinococcus multilocularis EmuJ_001049000 N 0.000
EmuJ_000768300 Echinococcus multilocularis EmuJ_000768300 N 0.000
D915_15256 Fasciola hepatica D915_15256 N 0.000
D915_00818 Fasciola hepatica D915_00818 N 0.000
Hsal_13110--XP_001121384.1_APIME Harpegnathos saltator Hsal_13110--XP_001121384.1_APIME N 0.000
HMEL007340 Heliconius melpomene HMEL007340 N 0.000
HelroG157878 Helobdella robusta HelroG157878 N 0.000
TTAC_0000225801 Hydatigera taeniaeformis TTAC_0000225801 N 0.000
TTAC_0000194001 Hydatigera taeniaeformis TTAC_0000194001 N 0.000
HDID_0000408601 Hymenolepis diminuta HDID_0000408601 N 0.000
HDID_0000237901 Hymenolepis diminuta HDID_0000237901 N 0.000
HmN_000813000 Hymenolepis microstoma HmN_000813000 N 0.000
HmN_000466000 Hymenolepis microstoma HmN_000466000 N 0.000
HNAJ_0001249801 Hymenolepis nana HNAJ_0001249801 N 0.000
HNAJ_0000974401 Hymenolepis nana HNAJ_0000974401 N 0.000
ISCW017350 Ixodes scapularis ISCW017350 N 0.000
LCUP007363 Lucilia cuprina LCUP007363 N 0.000
MCOS_0000726501 Mesocestoides corti MCOS_0000726501 N 0.000
MCOS_0000526101 Mesocestoides corti MCOS_0000526101 N 0.000
MDOA008812 Musca domestica MDOA008812 N 0.000
NV15664 Nasonia vitripennis NV15664 N 0.000
T265_14643 Opisthorchis viverrini T265_14643 N 0.000
T265_12733 Opisthorchis viverrini T265_12733 N 0.000
PXEA_0000566701 Protopolystoma xenopodis PXEA_0000566701 N 0.000
PXEA_0002175501 Protopolystoma xenopodis PXEA_0002175501 N 0.000
PXEA_0000637001 Protopolystoma xenopodis PXEA_0000637001 N 0.000
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.000
SSLN_0000493501 Schistocephalus solidus SSLN_0000493501 N 0.000
SCUD_0000067701 Schistosoma curassoni SCUD_0000067701 N 0.000
SCUD_0000020101 Schistosoma curassoni SCUD_0000020101 N 0.000
A_05510 Schistosoma haematobium A_05510 N 0.000
Sjc_0031360 Schistosoma japonicum Sjc_0031360 N 0.000
Smp_000980 Schistosoma mansoni Smp_000980 N 0.000
SMRZ_0000146101 Schistosoma margrebowiei SMRZ_0000146101 N 0.000
SMRZ_0001808901 Schistosoma margrebowiei SMRZ_0001808901 N 0.000
SMTD_0001194601 Schistosoma mattheei SMTD_0001194601 N 0.000
SROB_0000153901 Schistosoma rodhaini SROB_0000153901 N 0.000
SROB_0001061001 Schistosoma rodhaini SROB_0001061001 N 0.000
SMU15030256 Schmidtea mediterranea SMU15030256 N 0.000
SMU15016767 Schmidtea mediterranea SMU15016767 N 0.000
SMU15002907 Schmidtea mediterranea SMU15002907 N 0.000
SINV22586 Solenopsis invicta SINV22586 N 0.000
SMAR013695 Strigamia maritima SMAR013695 N 0.000
TsM_000115400 Taenia solium TsM_000115400 N 0.000
TsM_000088100 Taenia solium TsM_000088100 N 0.000
tetur02g08260 Tetranychus urticae tetur02g08260 N 0.000
tetur02g08340 Tetranychus urticae tetur02g08340 N 0.000
D917_08189 Trichinella nativa D917_08189 N 0.000
D917_01254 Trichinella nativa D917_01254 N 0.000
EFV57410 Trichinella spiralis EFV57410 N 0.000
TRE_0000506801 Trichobilharzia regenti TRE_0000506801 N 0.000
D918_07195 Trichuris suis D918_07195 N 0.000