GA11117 (Drosophila pseudoobscura)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0071172 T217548_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Abd-B
M00554_2.00 		Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN		 PBM
Busser et al.(2012a)
Abd-B 		0.867 1.000
Abd-B
M03772_2.00 		Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH		 SELEX
Nitta et al.(2015)
Abd-B_1 		0.867 1.000
Abd-B
M03773_2.00 		Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH		 SELEX
Nitta et al.(2015)
Abd-B_2 		0.867 1.000
Abd-B
M03774_2.00 		Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN		 SELEX
Nitta et al.(2015)
Abd-B_3 		0.867 1.000
Abd-B
M03775_2.00 		Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH		 SELEX
Nitta et al.(2015)
Abd-B_4 		0.867 1.000
Abd-B
M06476_2.00 		Drosophila melanogaster
TTTATKR
YMATAAA		 B1H
Mathelier et al.(2014)
MA0165.1 		0.867 1.000
Abd-B
M06211_2.00 		Drosophila melanogaster
YCATAAAA
TTTTATGR		 B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015 		0.867 1.000
Abd-B
M09672_2.00 		Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR		 Misc
Kulakovskiy et al.(2009)
Abd-B 		0.867 1.000
Abd-B
M10779_2.00 		Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB		 Transfac
Matys et al.(2006)
I$ABDB_01 		0.867 1.000
Abd-B
M10780_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDB_Q6 		0.867 1.000
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.721 0.632
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.721 0.632
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.721 0.632
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.721 0.632
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.721 0.632
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.721 0.632
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.721 0.632
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.721 0.632
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.721 0.632
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.721 0.632
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.721 0.632
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.721 0.632
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.721 0.632
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.721 0.632
Q9U9Y9_LINUN
M02218_2.00 		Lingula unguis
NNTAATWAATN
NATTWATTANN		 PBM
Weirauch et al.(2014)
pTH5504 		0.721 0.632
HXD12_HETFR
M02196_2.00 		Heterodontus francisci
TTWATKRC
GYMATWAA		 PBM
Weirauch et al.(2014)
pTH6533 		0.688 0.614
Hoxa9
M00475_2.00 		Mus musculus
NNDDBNNN
NNNVHHNN		 PBM
Berger et al.(2008)
Hoxa9_2622 		0.679 0.754
HOXA9
M03085_2.00 		Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN		 SELEX
Jolma et al.(2013)
HOXA10_1 		0.679 0.754
HOXA9
M03086_2.00 		Homo sapiens
NDTTWATKRYN
NRYMATWAAHN		 SELEX
Jolma et al.(2013)
HOXA10_2 		0.679 0.754
Hoxd9
M03282_2.00 		Mus musculus
TTTWATKKB
VMMATWAAA		 SELEX
Jolma et al.(2013)
Hoxd9_1 		0.679 0.754
Hoxd9
M03283_2.00 		Mus musculus
DWTTWATKRY
RYMATWAAWH		 SELEX
Jolma et al.(2013)
Hoxd9_2 		0.679 0.754
Hoxd9
M03284_2.00 		Mus musculus
DTTWAYGRB
VYCRTWAAH		 SELEX
Jolma et al.(2013)
Hoxd9_3 		0.679 0.754
HOXA9
M04932_2.00 		Homo sapiens
NNDWWABKRC
GYMVTWWHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1 		0.679 0.754
HOXA9
M04933_2.00 		Homo sapiens
NNDTWAYGRB
VYCRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2 		0.679 0.754
HOXC9
M05331_2.00 		Homo sapiens
GTCGTAAAAN
NTTTTACGAC		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1 		0.679 0.754
HOXC9
M05332_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2 		0.679 0.754
HOXD9
M05104_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1 		0.679 0.754
HOXD9
M05105_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2 		0.679 0.754
HOXD9
M05108_2.00 		Homo sapiens
RTCGTAAAWN
NWTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1 		0.679 0.754
HOXD9
M05109_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2 		0.679 0.754
Hoxa9
M08138_2.00 		Mus musculus
TGATTKATKRB
VYMATMAATCA		 ChIP-seq
Mathelier et al.(2014)
MA0594.1 		0.679 0.754
HOXA9
M09130_2.00 		Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C 		0.679 0.754
HOXA9
M09131_2.00 		Homo sapiens
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B 		0.679 0.754
HOXC9
M09161_2.00 		Homo sapiens
HTTWATKGCH
DGCMATWAAD		 Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C 		0.679 0.754
Hoxa9
M09203_2.00 		Mus musculus
HHATAAATCAH
DTGATTTATDD		 Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B 		0.679 0.754
Hoxa9
M09575_2.00 		Mus musculus
WGATTKATDRBY
RVYHATMAATCW		 Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509 		0.679 0.754
HOXA9
M10642_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q6 		0.679 0.754
HOXA9
M10643_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_04 		0.679 0.754
HOXA9
M10644_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5_01 		0.679 0.754
HOXA9
M10645_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA9_Q5 		0.679 0.754
HOXD9
M10686_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD9_Q2 		0.679 0.754
HOXA9
M04934_2.00 		Homo sapiens
NNDTWAYKRC
GYMRTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1 		0.679 0.754
HOXA9
M04935_2.00 		Homo sapiens
NNDTWACGAY
RTCGTWAHNN		 SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2 		0.679 0.754
HOXC9
M05333_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1 		0.679 0.754
HOXC9
M05334_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2 		0.679 0.754
HOXD9
M05106_2.00 		Homo sapiens
NNTTWATKRC
GYMATWAANN		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1 		0.679 0.754
HOXD9
M05107_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2 		0.679 0.754
HOXD9
M05110_2.00 		Homo sapiens
RTCGTAAANN
NNTTTACGAY		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1 		0.679 0.754
HOXD9
M05111_2.00 		Homo sapiens
NDTTWATKRC
GYMATWAAHN		 SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2 		0.679 0.754
Hoxb9
M00410_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb9_3413 		0.679 0.737
HOXB9
M05289_2.00 		Homo sapiens
RTCRTAAAWN
NWTTTAYGAY		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1 		0.679 0.737
HOXB9
M05290_2.00 		Homo sapiens
NTTTWATKRC
GYMATWAAAN		 SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2 		0.679 0.737
HOXB9
M05291_2.00 		Homo sapiens
GTCGTAAAHB
VDTTTACGAC		 SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX 		0.679 0.737
Hoxc9
M00470_2.00 		Mus musculus
NGTAATWAAN
NTTWATTACN		 PBM
Berger et al.(2008)
Hoxc9_2367 		0.671 0.737
Hoxc9
M08137_2.00 		Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN		 ChIP-seq
Mathelier et al.(2014)
MA0485.1 		0.671 0.737
Hoxc9
M09574_2.00 		Mus musculus
TGATTTATDGCH
DGCHATAAATCA		 Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812 		0.671 0.737
Hoxa10
M00382_2.00 		Mus musculus
NHWAYNNNN
NNNNRTWDN		 PBM
Berger et al.(2008)
Hoxa10_2318 		0.651 0.702
HOXA10
M05394_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1 		0.651 0.702
HOXA10
M05395_2.00 		Homo sapiens
NTTTTATKRCY
RGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2 		0.651 0.702
HOXA10
M05398_2.00 		Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1 		0.651 0.702
HOXA10
M05399_2.00 		Homo sapiens
NNTTWATKRCN
NGYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2 		0.651 0.702
Hoxa10
M09170_2.00 		Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH		 Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C 		0.651 0.702
Hoxa10
M10763_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA10_Q5 		0.651 0.702
HOXA10
M05396_2.00 		Homo sapiens
NGTCGTAAAWN
NWTTTACGACN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1 		0.651 0.702
HOXA10
M05397_2.00 		Homo sapiens
NTTTTATKRCB
VGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2 		0.651 0.702
HOXA10
M05400_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1 		0.651 0.702
HOXA10
M05401_2.00 		Homo sapiens
NNTTWATKRYN
NRYMATWAANN		 SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2 		0.651 0.702
Hoxc10
M00421_2.00 		Mus musculus
TTWATKAB
VTMATWAA		 PBM
Berger et al.(2008)
Hoxc10_2779 		0.651 0.684
Hoxd10
M00509_2.00 		Mus musculus
NNNNNNNN
NNNNNNNN		 PBM
Berger et al.(2008)
Hoxd10_2368 		0.651 0.684
HOXC10
M03228_2.00 		Homo sapiens
DTTTWATKDB
VHMATWAAAH		 SELEX
Jolma et al.(2013)
HOXC10_1 		0.651 0.684
HOXC10
M03229_2.00 		Homo sapiens
NNTTWATKRB
VYMATWAANN		 SELEX
Jolma et al.(2013)
HOXC10_2 		0.651 0.684
HOXC10
M03230_2.00 		Homo sapiens
NWTTWAYGAB
VTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC10_3 		0.651 0.684
Hoxc10
M03252_2.00 		Mus musculus
DTTTWAYGAY
RTCRTWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_1 		0.651 0.684
Hoxc10
M03253_2.00 		Mus musculus
DTTTWATKRY
RYMATWAAAH		 SELEX
Jolma et al.(2013)
Hoxc10_2 		0.651 0.684
HOXC10
M05335_2.00 		Homo sapiens
NDTTTATKRCN
NGYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1 		0.651 0.684
HOXC10
M05336_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2 		0.651 0.684
HOXC10
M05339_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1 		0.651 0.684
HOXC10
M05340_2.00 		Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2 		0.651 0.684
HOXD10
M05112_2.00 		Homo sapiens
NKTTTATKRC
GYMATAAAMN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1 		0.651 0.684
HOXD10
M05113_2.00 		Homo sapiens
RTCGTAAAHN
NDTTTACGAY		 SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2 		0.651 0.684
HOXD10
M05116_2.00 		Homo sapiens
RGTCGTAAAAH
DTTTTACGACY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1 		0.651 0.684
HOXD10
M05117_2.00 		Homo sapiens
RRYMATAAAAH
DTTTTATKRYY		 SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2 		0.651 0.684
HOXD10
M10687_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q2 		0.651 0.684
HOXD10
M10688_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD10_Q6 		0.651 0.684
HOXC10
M05337_2.00 		Homo sapiens
NTTTTATKRCN
NGYMATAAAAN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1 		0.651 0.684
HOXC10
M05338_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2 		0.651 0.684
HOXC10
M05341_2.00 		Homo sapiens
DTTTTATKRCH
DGYMATAAAAH		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1 		0.651 0.684
HOXC10
M05342_2.00 		Homo sapiens
VGTCGTAAAHN
NDTTTACGACB		 SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2 		0.651 0.684
HOXD10
M05114_2.00 		Homo sapiens
NTTTTATKRC
GYMATAAAAN		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1 		0.651 0.684
HOXD10
M05115_2.00 		Homo sapiens
GTCGTAAAHN
NDTTTACGAC		 SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2 		0.651 0.684
HOXD10
M05118_2.00 		Homo sapiens
VGTCGTAAAAH
DTTTTACGACB		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1 		0.651 0.684
HOXD10
M05119_2.00 		Homo sapiens
DGYAATAAAAH
DTTTTATTRCH		 SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2 		0.651 0.684
Hoxc11
M00390_2.00 		Mus musculus
NTTWAYDDBN
NVHHRTWAAN		 PBM
Berger et al.(2008)
Hoxc11_3718 		0.624 0.719
HOXC11
M03131_2.00 		Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_1 		0.624 0.719
HOXC11
M03132_2.00 		Homo sapiens
NWTTWATKRBH
DVYMATWAAWN		 SELEX
Jolma et al.(2013)
HOXC11_2 		0.624 0.719
HOXC11
M03133_2.00 		Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH		 SELEX
Jolma et al.(2013)
HOXC11_3 		0.624 0.719
HOXC11
M03134_2.00 		Homo sapiens
NTTTTATKRBN
NVYMATAAAAN		 SELEX
Jolma et al.(2013)
HOXC11_4 		0.624 0.719
HOXC11
M05075_2.00 		Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1 		0.624 0.719
HOXC11
M05076_2.00 		Homo sapiens
NWTTWATKRCH
DGYMATWAAWN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2 		0.624 0.719
HOXC11
M05079_2.00 		Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1 		0.624 0.719
HOXC11
M05080_2.00 		Homo sapiens
NDTTWATKRSN
NSYMATWAAHN		 SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2 		0.624 0.719
HOXC11
M05077_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1 		0.624 0.719
HOXC11
M05078_2.00 		Homo sapiens
NDTTTATKRSN
NSYMATAAAHN		 SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2 		0.624 0.719
HOXC11
M05081_2.00 		Homo sapiens
NRTCGTWAANN
NNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1 		0.624 0.719
HOXC11
M05082_2.00 		Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN		 SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2 		0.624 0.719
Hoxd11
M00493_2.00 		Mus musculus
DDDNNNNN
NNNNNHHH		 PBM
Berger et al.(2008)
Hoxd11_3873 		0.624 0.684
HOXD11
M03139_2.00 		Homo sapiens
RTCGTAAAWH
DWTTTACGAY		 SELEX
Jolma et al.(2013)
HOXD11_1 		0.624 0.684
HOXD11
M03140_2.00 		Homo sapiens
TTTWATKRBH
DVYMATWAAA		 SELEX
Jolma et al.(2013)
HOXD11_2 		0.624 0.684
HOXD11
M05120_2.00 		Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX 		0.624 0.684
HOXD11
M05121_2.00 		Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN		 SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX 		0.624 0.684
Hoxa11
M00474_2.00 		Mus musculus
NNHNHNNNN
NNNNDNDNN		 PBM
Berger et al.(2008)
Hoxa11_2218 		0.624 0.667
Hoxa11
M03274_2.00 		Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN		 SELEX
Jolma et al.(2013)
Hoxa11_1 		0.624 0.667
Hoxa11
M03275_2.00 		Mus musculus
NDTTWATKRNN
NNYMATWAAHN		 SELEX
Jolma et al.(2013)
Hoxa11_2 		0.624 0.667
HOXA11
M04897_2.00 		Homo sapiens
VGTCGTAAAWH
DWTTTACGACB		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1 		0.624 0.667
HOXA11
M04898_2.00 		Homo sapiens
DDTTWATKRSN
NSYMATWAAHH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2 		0.624 0.667
HOXA11
M04899_2.00 		Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1 		0.624 0.667
HOXA11
M04900_2.00 		Homo sapiens
DYTTTATKRCH
DGYMATAAARH		 SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2 		0.624 0.667
Hoxc6
M00392_2.00 		Mus musculus
TTAATTAB
VTAATTAA		 PBM
Berger et al.(2008)
Hoxc6_3954 		0.620 0.649
abd-A
M03770_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_1 		0.620 0.649
abd-A
M03771_2.00 		Drosophila melanogaster
NNTAATKRCN
NGYMATTANN		 SELEX
Nitta et al.(2015)
abd-A_2 		0.620 0.649
abd-A
M06475_2.00 		Drosophila melanogaster
TTAATKA
TMATTAA		 B1H
Mathelier et al.(2014)
MA0206.1 		0.620 0.649
abd-A
M06210_2.00 		Drosophila melanogaster
WTWATKDM
KHMATWAW		 B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014 		0.620 0.649
abd-A
M09671_2.00 		Drosophila melanogaster
HTAATKRH
DYMATTAD		 Misc
Kulakovskiy et al.(2009)
abd-A 		0.620 0.649
abd-A
M10778_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$ABDA_Q6 		0.620 0.649
Hoxa6
M00494_2.00 		Mus musculus
NWWATKRNN
NNYMATWWN		 PBM
Berger et al.(2008)
Hoxa6_1040 		0.620 0.632
HOXA6
M04974_2.00 		Homo sapiens
NNTAATKRVN
NBYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX 		0.620 0.632
HOXA6
M04975_2.00 		Homo sapiens
NNTAATKRBN
NVYMATTANN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1 		0.620 0.632
HOXA6
M04976_2.00 		Homo sapiens
NTAAYGRY
RYCRTTAN		 SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2 		0.620 0.632
Hoxd8
M00436_2.00 		Mus musculus
NNWWYNNN
NNNRWWNN		 PBM
Berger et al.(2008)
Hoxd8_2644 		0.620 0.684
HOXD8
M03221_2.00 		Homo sapiens
VHWAATKWDN
NHWMATTWDB		 SELEX
Jolma et al.(2013)
HOXD8_1 		0.620 0.684
HOXD8
M05310_2.00 		Homo sapiens
BTAATKRY
RYMATTAV		 SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX 		0.620 0.684
HOXD8
M05311_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1 		0.620 0.684
HOXD8
M05312_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2 		0.620 0.684
Hoxc8
M00391_2.00 		Mus musculus
NNDNYNNNN
NNNNRNHNN		 PBM
Berger et al.(2008)
Hoxc8_3429 		0.620 0.667
Hoxb8
M00517_2.00 		Mus musculus
NWWAYNDNN
NNHNRTWWN		 PBM
Berger et al.(2008)
Hoxb8_3780 		0.620 0.667
HOXB8
M05048_2.00 		Homo sapiens
NTAATKRM
KYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX 		0.620 0.667
HOXC8
M04912_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX 		0.620 0.667
HOXB8
M09141_2.00 		Homo sapiens
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C 		0.620 0.667
Hoxb8
M09214_2.00 		Mus musculus
BMATHAATCAA
TTGATTDATKV		 Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C 		0.620 0.667
HOXC8
M10636_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC8_Q3 		0.620 0.667
HOXB8
M05049_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1 		0.620 0.667
HOXB8
M05050_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2 		0.620 0.667
HOXC8
M04913_2.00 		Homo sapiens
NYMATKRN
NYMATKRN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1 		0.620 0.667
HOXC8
M04914_2.00 		Homo sapiens
NTWAYGRY
RYCRTWAN		 SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2 		0.620 0.667
Hoxb6
M00381_2.00 		Mus musculus
NNDHNNN
NNNDHNN		 PBM
Berger et al.(2008)
Hoxb6_3428 		0.616 0.614
Ubx
M00558_2.00 		Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN		 PBM
Busser et al.(2012a)
Ubx 		0.616 0.614
Ubx
M03804_2.00 		Drosophila melanogaster
NTAATKRH
DYMATTAN		 SELEX
Nitta et al.(2015)
Ubx_1 		0.616 0.614
HOXB6
M04999_2.00 		Homo sapiens
NTAATKRY
RYMATTAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX 		0.616 0.614
Ubx
M06499_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Mathelier et al.(2014)
MA0094.2 		0.616 0.614
Ubx
M06273_2.00 		Drosophila melanogaster
NTTAATKR
YMATTAAN		 B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944 		0.616 0.614
Ubx
M06274_2.00 		Drosophila melanogaster
TAATKD
HMATTA		 B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944 		0.616 0.614
Ubx
M06275_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944 		0.616 0.614
Ubx
M09680_2.00 		Drosophila melanogaster
TTAATKR
YMATTAA		 Misc
Kulakovskiy et al.(2009)
Ubx 		0.616 0.614
Ubx
M10788_2.00 		Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN		 Transfac
Matys et al.(2006)
I$UBX_01 		0.616 0.614
HOXB6
M05000_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1 		0.616 0.614
HOXB6
M05001_2.00 		Homo sapiens
NTWATKRB
VYMATWAN		 SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2 		0.616 0.614
Q8I9J5_9BILA
M02214_2.00 		Spadella cephaloptera
NVTAWTWABN
NVTWAWTABN		 PBM
Weirauch et al.(2014)
pTH6164 		0.616 0.526
CBG00023
M02062_2.00 		Caenorhabditis briggsae
NWWATKDNNN
NNNHMATWWN		 PBM
Weirauch et al.(2014)
pTH5778 		0.604 0.579
egl-5
M09581_2.00 		Caenorhabditis elegans
DWTTWATGGS
SCCATWAAWH		 Misc
Heinz et al.(2010)
cElegans-L3-EGL5_modEncode 		0.604 0.561
Hoxc5
M00422_2.00 		Mus musculus
NWRATND
HNATYWN		 PBM
Berger et al.(2008)
Hoxc5_2630 		0.601 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0281793 Homeodomain 430 486
FBpp0302551 Homeodomain 170 226

Links

Other Homeodomain family TFs
Other Drosophila pseudoobscura TFs

1463 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006441 Ailuropoda melanoleuca ENSAMEG00000006441 I
ENSAMEG00000015207 Ailuropoda melanoleuca ENSAMEG00000015207 I
Alligator_sinensis_CCG013745.1 Alligator sinensis Alligator_sinensis_CCG013745.1 I
ANCCAN_08871 Ancylostoma caninum ANCCAN_08871 I
ANCCEY_05795 Ancylostoma ceylanicum ANCCEY_05795 I
ANCDUO_14286 Ancylostoma duodenale ANCDUO_14286 I
GSC Anolis carolinensis ENSACAG00000012996 I
Afo_R004609 Aptenodytes forsteri Afo_R004609 I
ENSAMXG00000010712 Astyanax mexicanus ENSAMXG00000010712 I
ENSP00000238558-D1 Bos grunniens ENSP00000238558-D1 I
GSC Bos taurus ENSBTAG00000010407 I
Brh_R013322 Buceros rhinoceros Brh_R013322 I
CBN01461 Caenorhabditis brenneri CBN01461 I
CBG16311 Caenorhabditis briggsae CBG16311 I
ceh-37 Caenorhabditis elegans WBGene00000458 D
CJA13871 Caenorhabditis japonica CJA13871 I
CRE07572 Caenorhabditis remanei CRE07572 I
LEUTX Callithrix jacchus ENSCJAG00000007650 I
GSC Callithrix jacchus ENSCJAG00000009866 I
ENSCJAG00000031515 Callithrix jacchus ENSCJAG00000031515 I
Aan_R000601 Calypte anna Aan_R000601 I
GSC Canis familiaris ENSCAFG00000017684 I
CapteG167382 Capitella teleta CapteG167382 I
GSC Cavia porcellus ENSCPOG00000024717 I
Cmyd_10021002 Chelonia mydas Cmyd_10021002 I
ENSCSAG00000010709 Chlorocebus sabaeus ENSCSAG00000010709 I
gsc Danio rerio ENSDARG00000059073 I
GSC Dasypus novemcinctus ENSDNOG00000009490 I
ENSDNOG00000034518 Dasypus novemcinctus ENSDNOG00000034518 I
ENSDNOG00000036918 Dasypus novemcinctus ENSDNOG00000036918 I
ENSECAG00000024741 Equus caballus ENSECAG00000024741 I
GSC Erinaceus europaeus ENSEEUG00000000502 I
ENSFCAG00000026142 Felis catus ENSFCAG00000026142 I
ENSFALG00000002510 Ficedula albicollis ENSFALG00000002510 I
ENSGMOG00000001349 Gadus morhua ENSGMOG00000001349 I
ENSGMOG00000006101 Gadus morhua ENSGMOG00000006101 I
GSC Gallus gallus ENSGALG00000010974 I
gsc Gasterosteus aculeatus ENSGACG00000013047 I
Gfo_R006720 Geospiza fortis Gfo_R006720 I
GSC Gorilla gorilla ENSGGOG00000007819 I
LEUTX Gorilla gorilla ENSGGOG00000027834 I
HCOI00475500 Haemonchus contortus HCOI00475500 I
HCOI01021200 Haemonchus contortus HCOI01021200 I
HPBE_0001132001 Heligmosomoides bakeri HPBE_0001132001 I
GSC Homo sapiens ENSG00000133937 D
TPRX1 Homo sapiens ENSG00000178928 I
XP_002157088.1 Hydra magnipapillata XP_002157088.1 I
HmN_000666600 Hymenolepis microstoma HmN_000666600 I
ENSSTOG00000016175 Ictidomys tridecemlineatus ENSSTOG00000016175 I
ENSLACG00000005216 Latimeria chalumnae ENSLACG00000005216 I
ENSLOCG00000008557 Lepisosteus oculatus ENSLOCG00000008557 I
LotgiG229731 Lottia gigantea LotgiG229731 I
GSC Loxodonta africana ENSLAFG00000021599 I
ENSP00000407583 Macaca fascicularis ENSP00000407583 I
ENSMMUG00000023066 Macaca mulatta ENSMMUG00000023066 I
ENSMEUG00000008495 Macropus eugenii ENSMEUG00000008495 I
GSC Meleagris gallopavo ENSMGAG00000013203 I
ENSMICG00000003307 Microcebus murinus ENSMICG00000003307 I
GSC Monodelphis domestica ENSMODG00000012586 I
ENSMPUG00000003137 Mustela putorius furo ENSMPUG00000003137 I
Gsc Mus musculus ENSMUSG00000021095 D
Obox6 Mus musculus ENSMUSG00000041583 D
Obox1 Mus musculus ENSMUSG00000054310 D
Obox7 Mus musculus ENSMUSG00000055942 I
Obox3 Mus musculus ENSMUSG00000066772 D
Obox5 Mus musculus ENSMUSG00000074366 D
Q8VHG7_MOUSE Mus musculus ENSMUSG00000074369 D
Myotis_brandtii_RX1_10024726 Myotis brandtii Myotis_brandtii_RX1_10024726 I
GSC Myotis lucifugus ENSMLUG00000004290 I
NECAME_10077 Necator americanus NECAME_10077 I
NEMVEDRAFT_v1g113057 Nematostella vectensis NEMVEDRAFT_v1g113057 D
NEMVEDRAFT_v1g18446 Nematostella vectensis NEMVEDRAFT_v1g18446 I
ENSNLEG00000000972 Nomascus leucogenys ENSNLEG00000000972 I
ENSNLEG00000014279 Nomascus leucogenys ENSNLEG00000014279 I
ENSNLEG00000017307 Nomascus leucogenys ENSNLEG00000017307 I
GSC Ochotona princeps ENSOPRG00000002305 I
Ocbimv22019499m.g Octopus bimaculoides Ocbimv22019499m.g I
OESDEN_03496 Oesophagostomum dentatum OESDEN_03496 I
Ogr08956 Ophisaurus gracilis Ogr08956 I
ENSONIG00000010422 Oreochromis niloticus ENSONIG00000010422 I
ENSOANG00000012036 Ornithorhynchus anatinus ENSOANG00000012036 I
GSC Oryctolagus cuniculus ENSOCUG00000026355 I
ENSOGAG00000025340 Otolemur garnettii ENSOGAG00000025340 I
GSC Otolemur garnettii ENSOGAG00000028102 I
ENSOGAG00000028694 Otolemur garnettii ENSOGAG00000028694 I
ENSOARG00000002459 Ovis aries ENSOARG00000002459 I
ENSOARG00000015387 Ovis aries ENSOARG00000015387 I
GSC Pan troglodytes ENSPTRG00000006687 I
ENSPTRG00000011217 Pan troglodytes ENSPTRG00000011217 I
ENSPANG00000023077 Papio anubis ENSPANG00000023077 I
PTRK_0000465700 Parastrongyloides trichosuri PTRK_0000465700 I
ENSPSIG00000010793 Pelodiscus sinensis ENSPSIG00000010793 I
ENSPFOG00000008510 Poecilia formosa ENSPFOG00000008510 I
Pvit_04349 Pogona vitticeps Pvit_04349 I
Pvit_09824 Pogona vitticeps Pvit_09824 I
ENSPPYG00000006111 Pongo abelii ENSPPYG00000006111 I
ENSPPYG00000009977 Pongo abelii ENSPPYG00000009977 I
GSC Procavia capensis ENSPCAG00000006902 I
Gsc Rattus norvegicus ENSRNOG00000010605 I
LOC100361016 Rattus norvegicus ENSRNOG00000021972 I
RGD1564236 Rattus norvegicus ENSRNOG00000029702 I
Obox2 Rattus norvegicus ENSRNOG00000032891 I
AABR07002351.2 Rattus norvegicus ENSRNOG00000060136 I
RSKR_0000763400 Rhabditophanes kr3021 RSKR_0000763400 I
ENSSHAG00000014598 Sarcophilus harrisii ENSSHAG00000014598 I
A_06523 Schistosoma haematobium A_06523 I
ENSSARG00000006664 Sorex araneus ENSSARG00000006664 I
L596_g2971 Steinernema carpocapsae L596_g2971 I
L892_g12531 Steinernema scapterisci L892_g12531 I
SMAR013146 Strigamia maritima SMAR013146 I
SPAL_0000383900 Strongyloides papillosus SPAL_0000383900 I
SPAL_0000625000 Strongyloides papillosus SPAL_0000625000 I
SSTP_0000819600 Strongyloides stercoralis SSTP_0000819600 I
SSTP_0000876100 Strongyloides stercoralis SSTP_0000876100 I
SVE_0230200 Strongyloides venezuelensis SVE_0230200 I
SVE_0783800 Strongyloides venezuelensis SVE_0783800 I
SVUK_0001103601 Strongylus vulgaris SVUK_0001103601 I
GSC Sus scrofa ENSSSCG00000002490 I
TsM_001086400 Taenia solium TsM_001086400 I
ENSTGUG00000012655 Taeniopygia guttata ENSTGUG00000012655 I
gsc Takifugu rubripes ENSTRUG00000006728 I
TELCIR_16419 Teladorsagia circumcincta TELCIR_16419 I
ENSTNIG00000009078 Tetraodon nigroviridis ENSTNIG00000009078 I
GSC Tupaia belangeri ENSTBEG00000015016 I
GSC Tursiops truncatus ENSTTRG00000007961 I
gsc.L Xenopus laevis XB-GENE-6252605 I
gsc.S Xenopus laevis XB-GENE-864870 I
AAI21521 Xenopus tropicalis AAI21521 I
AAI57209 Xenopus tropicalis AAI57209 I
AAY96798 Xenopus tropicalis AAY96798 I
gsc Xenopus tropicalis XB-GENE-486771 D