GH21164 (Drosophila grimshawi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0128626 T217814_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 0.964
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 0.964
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 0.964
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 0.964
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 0.964
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 0.964
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 0.964
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 0.964
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.982
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.982
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.982
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.982
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.982
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.982
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.982
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.982
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.945
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.945
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.945
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.945
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.945
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.945
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.945
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.945
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.945
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.945
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.691
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.691
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.691
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.691
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.691
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.691
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.691
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.691
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.691
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.691
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0155070 Homeodomain 238 292

Links

Other Homeodomain family TFs
Other Drosophila grimshawi TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.000
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I 0.000
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.000
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I 0.000
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I 0.000
ANCDUO_24681 Ancylostoma duodenale ANCDUO_24681 N 0.000
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I 0.000
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I 0.000
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.000
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I 0.000
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I 0.000
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.000
ASU_01199 Ascaris suum ASU_01199 I 0.000
ASU_04305 Ascaris suum ASU_04305 I 0.000
ASU_09451 Ascaris suum ASU_09451 N 0.000
Bm12053 Brugia malayi Bm12053 I 0.000
Bm2389 Brugia malayi Bm2389 I 0.000
Bm4894 Brugia malayi Bm4894 I 0.000
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.000
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.000
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.000
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I 0.000
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.000
CBN07936 Caenorhabditis brenneri CBN07936 I 0.000
CBN13729 Caenorhabditis brenneri CBN13729 I 0.000
CBN18797 Caenorhabditis brenneri CBN18797 I 0.000
CBN20828 Caenorhabditis brenneri CBN20828 I 0.000
CBN25890 Caenorhabditis brenneri CBN25890 N 0.000
CBN26258 Caenorhabditis brenneri CBN26258 I 0.000
CBN31048 Caenorhabditis brenneri CBN31048 I 0.000
CBG06052 Caenorhabditis briggsae CBG06052 I 0.000
CBG17744 Caenorhabditis briggsae CBG17744 I 0.000
CBG19594 Caenorhabditis briggsae CBG19594 I 0.000
CBG19604 Caenorhabditis briggsae CBG19604 I 0.000
nhr-7 Caenorhabditis elegans WBGene00003606 D 0.000
nhr-31 Caenorhabditis elegans WBGene00003625 I 0.000
nhr-88 Caenorhabditis elegans WBGene00003678 I 0.000
nhr-119 Caenorhabditis elegans WBGene00003709 I 0.000
CJA04720 Caenorhabditis japonica CJA04720 I 0.000
CJA08328 Caenorhabditis japonica CJA08328 I 0.000
CJA13646 Caenorhabditis japonica CJA13646 I 0.000
CRE02711 Caenorhabditis remanei CRE02711 I 0.000
CRE06661 Caenorhabditis remanei CRE06661 I 0.000
CRE06667 Caenorhabditis remanei CRE06667 I 0.000
CRE10161 Caenorhabditis remanei CRE10161 I 0.000
CRE12779 Caenorhabditis remanei CRE12779 I 0.000
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I 0.000
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I 0.000
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.000
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.000
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I 0.000
DME_0000188101 Dracunculus medinensis DME_0000188101 I 0.000
DME_0000742401 Dracunculus medinensis DME_0000742401 I 0.000
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.000
EVEC_0000733201 Enterobius vermicularis EVEC_0000733201 N 0.000
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I 0.000
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.000
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.000
GPLIN_001106000 Globodera pallida GPLIN_001106000 I 0.000
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.000
HCOI00435200 Haemonchus contortus HCOI00435200 I 0.000
HCOI00769300 Haemonchus contortus HCOI00769300 I 0.000
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.000
HCOI01406200 Haemonchus contortus HCOI01406200 I 0.000
HCOI01716000 Haemonchus contortus HCOI01716000 I 0.000
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I 0.000
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I 0.000
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I 0.000
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.000
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I 0.000
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.000
LOAG_01074 Loa loa LOAG_01074 I 0.000
LOAG_05485 Loa loa LOAG_05485 I 0.000
genemark-nMf.1.1.scaf00140-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00140-processed-gene-0.6 I 0.000
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.000
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.000
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.000
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.000
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.000
Minc01725 Meloidogyne incognita Minc01725 I 0.000
Minc13525 Meloidogyne incognita Minc13525 I 0.000
Minc15420 Meloidogyne incognita Minc15420 I 0.000
NECAME_05125 Necator americanus NECAME_05125 I 0.000
NECAME_12696 Necator americanus NECAME_12696 I 0.000
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.000
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I 0.000
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I 0.000
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I 0.000
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I 0.000
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.000
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.000
nOo.2.0.1.g02048 Onchocerca ochengi nOo.2.0.1.g02048 N 0.000
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.000
WBGene00241236 Onchocerca volvulus WBGene00241236 I 0.000
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.000
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.000
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I 0.000
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I 0.000
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.000
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.000
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.000
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I 0.000
PPA20304 Pristionchus pacificus PPA20304 I 0.000
PPA21285 Pristionchus pacificus PPA21285 I 0.000
Ppa-nhr-31 Pristionchus pacificus PPA24219 I 0.000
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I 0.000
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N 0.000
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.000
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.000
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.000
L596_g3809 Steinernema carpocapsae L596_g3809 I 0.000
L596_g3812 Steinernema carpocapsae L596_g3812 I 0.000
L889_g29204 Steinernema feltiae L889_g29204 I 0.000
L889_g5777 Steinernema feltiae L889_g5777 I 0.000
L889_g6303 Steinernema feltiae L889_g6303 I 0.000
L889_g8361 Steinernema feltiae L889_g8361 I 0.000
L889_g8621 Steinernema feltiae L889_g8621 I 0.000
L893_g27196 Steinernema glaseri L893_g27196 I 0.000
L893_g27201 Steinernema glaseri L893_g27201 I 0.000
L893_g29388 Steinernema glaseri L893_g29388 I 0.000
L893_g32432 Steinernema glaseri L893_g32432 I 0.000
L893_g6878 Steinernema glaseri L893_g6878 I 0.000
L898_g10316 Steinernema monticolum L898_g10316 I 0.000
L898_g23965 Steinernema monticolum L898_g23965 I 0.000
L898_g24498 Steinernema monticolum L898_g24498 I 0.000
L898_g2799 Steinernema monticolum L898_g2799 I 0.000
L898_g4801 Steinernema monticolum L898_g4801 I 0.000
L892_g21738 Steinernema scapterisci L892_g21738 I 0.000
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.000
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I 0.000
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.000
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.000
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.000
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I 0.000
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.000
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.000
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.000
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.000
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.000
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I 0.000
SMUV_0000212501 Syphacia muris SMUV_0000212501 I 0.000
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.000
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.000
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I 0.000
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I 0.000
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.000
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.000