PGSC0003DMG400027030 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400027030 T222212_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.851 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400069528 Homeodomain 18 79
PGSC0003DMT400069529 Homeodomain 18 79

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11947 Aegilops tauschii F775_11947 I 0.809
F775_22811 Aegilops tauschii F775_22811 I 0.840
F775_23099 Aegilops tauschii F775_23099 I 0.723
AMTR_s00012p00149750 Amborella trichopoda AMTR_s00012p00149750 I 0.606
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.739
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.840
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.838
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.739
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.739
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.844
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.851
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.703
WOX9 Arabidopsis thaliana AT2G33880 I 0.739
WOX11 Arabidopsis thaliana AT3G03660 D 0.851
WOX12 Arabidopsis thaliana AT5G17810 I 0.844
WOX8 Arabidopsis thaliana AT5G45980 I 0.698
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.852
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.739
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.703
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.838
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.809
Bo11772s010 Brassica oleracea Bo11772s010 I 0.821
Bo1g153650 Brassica oleracea Bo1g153650 I 0.852
Bo2g013980 Brassica oleracea Bo2g013980 I 0.821
Bo2g062660 Brassica oleracea Bo2g062660 I 0.821
Bo2g127670 Brassica oleracea Bo2g127670 I 0.703
Bo3g027500 Brassica oleracea Bo3g027500 I 0.739
Bo4g041330 Brassica oleracea Bo4g041330 I 0.739
Bo5g148780 Brassica oleracea Bo5g148780 I 0.850
Bo8g106350 Brassica oleracea Bo8g106350 I 0.614
Bo9g070070 Brassica oleracea Bo9g070070 I 0.655
Bo9g159820 Brassica oleracea Bo9g159820 I 0.844
Bra002108 Brassica rapa Bra002108 I 0.844
Bra005464 Brassica rapa Bra005464 I 0.739
Bra017448 Brassica rapa Bra017448 I 0.655
Bra022008 Brassica rapa Bra022008 I 0.703
Bra022960 Brassica rapa Bra022960 I 0.739
Bra023638 Brassica rapa Bra023638 I 0.821
Bra026791 Brassica rapa Bra026791 I 0.614
Bra031980 Brassica rapa Bra031980 I 0.850
Bra036446 Brassica rapa Bra036446 I 0.852
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.739
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.703
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.852
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.850
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.850
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.852
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.739
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.703
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.739
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.840
Ca_00357 Cicer arietinum Ca_00357 I 0.739
Ca_06365 Cicer arietinum Ca_06365 I 0.739
Ca_08180 Cicer arietinum Ca_08180 I 0.838
Ca_19701 Cicer arietinum Ca_19701 I 0.838
Cla008386 Citrullus lanatus Cla008386 I 0.606
Cla009819 Citrullus lanatus Cla009819 I 0.739
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.739
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.838
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.739
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.838
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.739
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.838
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.840
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.739
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.683
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.614
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.852
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.739
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.852
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.725
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.739
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.838
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.840
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.739
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.739
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.739
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.739
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.840
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.838
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.739
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.739
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.838
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.840
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.809
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.735
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.739
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.840
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.840
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.808
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.739
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.739
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.838
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.838
MDP0000136426 Malus domestica MDP0000136426 I 0.838
MDP0000232004 Malus domestica MDP0000232004 I 0.739
MDP0000524885 Malus domestica MDP0000524885 I 0.838
MDP0000729328 Malus domestica MDP0000729328 I 0.739
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.838
cassava38630.m1 Manihot esculenta cassava38630.m1 I 0.606
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.739
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.739
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.812
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.739
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.653
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.670
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.840
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.739
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.838
mgf001579m Mimulus guttatus mgf001579m I 0.739
mgf016673m Mimulus guttatus mgf016673m I 0.838
mgf017527m Mimulus guttatus mgf017527m I 0.805
mgf023275m Mimulus guttatus mgf023275m I 0.607
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.795
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.838
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.795
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.799
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.838
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.830
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.739
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.832
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.739
OBART01G25820 Oryza barthii OBART01G25820 I 0.739
OBART03G15820 Oryza barthii OBART03G15820 I 0.840
OBART05G25900 Oryza barthii OBART05G25900 I 0.723
OBART07G26670 Oryza barthii OBART07G26670 I 0.840
OB01G35000 Oryza brachyantha OB01G35000 I 0.739
OB08G17020 Oryza brachyantha OB08G17020 I 0.787
OB10G14840 Oryza brachyantha OB10G14840 I 0.745
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.739
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.840
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.723
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.840
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.601
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.809
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.739
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.840
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.723
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.840
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.809
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.739
WOX6 Oryza indica BGIOSGA010824 I 0.840
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.723
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.840
WOX10 Oryza indica BGIOSGA027391 I 0.809
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.739
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.601
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.840
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.739
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.723
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.840
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.809
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.840
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.723
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.840
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.840
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.723
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.840
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.809
OS01G0667450 Oryza sativa OS01G0667450 I 0.739
OS03G0325600 Oryza sativa OS03G0325600 I 0.840
OS05G0564500 Oryza sativa OS05G0564500 I 0.723
OS07G0533201 Oryza sativa OS07G0533201 N 0.601
WOX11 Oryza sativa OS07G0684900 I 0.840
WOX10 Oryza sativa OS08G0242400 I 0.809
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.840
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.756
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.739
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.809
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.840
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.756
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.840
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.800
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.714
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.634
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.739
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.739
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.838
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.838
Pm010370 Prunus mume Pm010370 I 0.739
Pm025458 Prunus mume Pm025458 I 0.818
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.739
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.838
29876.m000245 Ricinus communis 29876.m000245 I 0.606
29900.m001555 Ricinus communis 29900.m001555 I 0.739
30072.m000927 Ricinus communis 30072.m000927 I 0.838
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.739
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.739
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.838
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.838
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.651
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.651
Si004249m.g Setaria italica Si004249m.g I 0.735
Si015065m.g Setaria italica Si015065m.g I 0.809
Si025013m.g Setaria italica Si025013m.g I 0.756
Si030836m.g Setaria italica Si030836m.g I 0.840
Si039112m.g Setaria italica Si039112m.g I 0.840
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.739
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.867
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.739
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.840
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.840
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.809
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.756
TCM_025805 Theobroma cacao TCM_025805 I 0.838
TCM_029776 Theobroma cacao TCM_029776 I 0.739
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.840
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.840
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.735
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.809
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.840
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.840
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.820
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.809
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.838
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.739
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.739
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.739
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.840
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.809
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.809
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.756