TC000361 (Tribolium castaneum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TC000361 T223794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC000361-PA Homeodomain 171 227

Links

Other Homeodomain family TFs
Other Tribolium castaneum TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01237 Aegilops tauschii F775_01237 N 0.000
F775_22020 Aegilops tauschii F775_22020 I 0.000
F775_22331 Aegilops tauschii F775_22331 I 0.000
F775_22648 Aegilops tauschii F775_22648 N 0.000
F775_52314 Aegilops tauschii F775_52314 I 0.000
AMTR_s00009p00143340 Amborella trichopoda AMTR_s00009p00143340 I 0.000
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.000
Aquca_034_00376 Aquilegia coerulea Aquca_034_00376 I 0.000
ERF094 Arabidopsis thaliana AT1G06160 D 0.000
Bostr.25219s0341 Boechera stricta Bostr.25219s0341 I 0.000
BRADI4G38930 Brachypodium distachyon BRADI4G38930 I 0.000
Bo5g007280 Brassica oleracea Bo5g007280 I 0.000
Bo8g114710 Brassica oleracea Bo8g114710 I 0.000
Bra032433 Brassica rapa Bra032433 I 0.000
Cagra.1671s0247 Capsella grandiflora Cagra.1671s0247 I 0.000
Carubv10010105m.g Capsella rubella Carubv10010105m.g I 0.000
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.000
Ca_12221 Cicer arietinum Ca_12221 I 0.000
Ca_23170 Cicer arietinum Ca_23170 I 0.000
Cla006080 Citrullus lanatus Cla006080 I 0.000
Cla007697 Citrullus lanatus Cla007697 I 0.000
Cla015066 Citrullus lanatus Cla015066 I 0.000
Cla021850 Citrullus lanatus Cla021850 I 0.000
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.000
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.000
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.000
Cucsa.255340 Cucumis sativus Cucsa.255340 I 0.000
Cucsa.388530 Cucumis sativus Cucsa.388530 I 0.000
Eucgr.H03088 Eucalyptus grandis Eucgr.H03088 I 0.000
Eucgr.K03266 Eucalyptus grandis Eucgr.K03266 I 0.000
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.000
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.000
GLYMA02G00870 Glycine max GLYMA02G00870 I 0.000
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.000
GLYMA10G00980 Glycine max GLYMA10G00980 I 0.000
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.000
GLYMA10G33060 Glycine max GLYMA10G33060 I 0.000
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.000
GLYMA13G18350 Glycine max GLYMA13G18350 I 0.000
GLYMA13G18370 Glycine max GLYMA13G18370 I 0.000
GLYMA13G18390 Glycine max GLYMA13G18390 I 0.000
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.000
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.000
GLYMA20G34570 Glycine max GLYMA20G34570 I 0.000
Gorai.001G176800 Gossypium raimondii Gorai.001G176800 I 0.000
Gorai.001G252600 Gossypium raimondii Gorai.001G252600 I 0.000
Gorai.001G253000 Gossypium raimondii Gorai.001G253000 I 0.000
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.000
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.000
Gorai.011G173000 Gossypium raimondii Gorai.011G173000 I 0.000
Gorai.013G186800 Gossypium raimondii Gorai.013G186800 I 0.000
MLOC_43207 Hordeum vulgare MLOC_43207 I 0.000
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.000
LPERR07G06830 Leersia perrieri LPERR07G06830 I 0.000
LPERR09G16380 Leersia perrieri LPERR09G16380 I 0.000
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.000
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.000
Lus10022015.g Linum usitatissimum Lus10022015.g I 0.000
Lus10022935.g Linum usitatissimum Lus10022935.g I 0.000
Lus10042557.g Linum usitatissimum Lus10042557.g I 0.000
chr6.CM1613.110.nc Lotus japonicus chr6.CM1613.110.nc I 0.000
MDP0000127134 Malus domestica MDP0000127134 I 0.000
MDP0000167207 Malus domestica MDP0000167207 I 0.000
MDP0000235313 Malus domestica MDP0000235313 I 0.000
MDP0000855671 Malus domestica MDP0000855671 I 0.000
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.000
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.000
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.000
MTR_1g069940 Medicago truncatula MTR_1g069940 I 0.000
MTR_4g054860 Medicago truncatula MTR_4g054860 I 0.000
MTR_7g096830 Medicago truncatula MTR_7g096830 I 0.000
mgf020623m Mimulus guttatus mgf020623m I 0.000
mgf022372m Mimulus guttatus mgf022372m I 0.000
mgf023779m Mimulus guttatus mgf023779m I 0.000
GSMUA_Achr11G22020_001 Musa acuminata GSMUA_Achr11G22020_001 I 0.000
GSMUA_Achr1G01380_001 Musa acuminata GSMUA_Achr1G01380_001 I 0.000
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.000
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.000
GSMUA_Achr4G12060_001 Musa acuminata GSMUA_Achr4G12060_001 I 0.000
GSMUA_Achr5G19610_001 Musa acuminata GSMUA_Achr5G19610_001 I 0.000
GSMUA_AchrUn_randomG10760_001 Musa acuminata GSMUA_AchrUn_randomG10760_001 I 0.000
OBART07G11330 Oryza barthii OBART07G11330 I 0.000
OBART07G11340 Oryza barthii OBART07G11340 I 0.000
OBART09G20410 Oryza barthii OBART09G20410 I 0.000
OB09G27130 Oryza brachyantha OB09G27130 I 0.000
ORGLA07G0097000 Oryza glaberrima ORGLA07G0097000 I 0.000
ORGLA07G0097100 Oryza glaberrima ORGLA07G0097100 I 0.000
OGLUM07G10870 Oryza glumaepatula OGLUM07G10870 I 0.000
OGLUM07G10880 Oryza glumaepatula OGLUM07G10880 I 0.000
OGLUM09G21150 Oryza glumaepatula OGLUM09G21150 I 0.000
BGIOSGA024428 Oryza indica BGIOSGA024428 I 0.000
BGIOSGA024429 Oryza indica BGIOSGA024429 I 0.000
BGIOSGA031313 Oryza indica BGIOSGA031313 I 0.000
OLONG_005597 Oryza longistaminata OLONG_005597 I 0.000
ONIVA01G50300 Oryza nivara ONIVA01G50300 I 0.000
ONIVA07G09500 Oryza nivara ONIVA07G09500 I 0.000
ONIVA09G20840 Oryza nivara ONIVA09G20840 I 0.000
OPUNC07G10310 Oryza punctata OPUNC07G10310 I 0.000
OPUNC09G18690 Oryza punctata OPUNC09G18690 I 0.000
ORUFI07G11580 Oryza rufipogon ORUFI07G11580 I 0.000
ORUFI07G11590 Oryza rufipogon ORUFI07G11590 I 0.000
ORUFI09G22040 Oryza rufipogon ORUFI09G22040 I 0.000
OS07G0410700 Oryza sativa OS07G0410700 I 0.000
OS09G0572000 Oryza sativa OS09G0572000 I 0.000
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.000
Pavir.Ba02781 Panicum virgatum Pavir.Ba02781 I 0.000
Pavir.Ba03491 Panicum virgatum Pavir.Ba03491 I 0.000
Pavir.Bb00652 Panicum virgatum Pavir.Bb00652 I 0.000
Pavir.Bb00653 Panicum virgatum Pavir.Bb00653 I 0.000
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.000
Pavir.Ga02734 Panicum virgatum Pavir.Ga02734 N 0.000
Pavir.Ha00304 Panicum virgatum Pavir.Ha00304 I 0.000
Pavir.Ha00307 Panicum virgatum Pavir.Ha00307 I 0.000
Pavir.Ha01200 Panicum virgatum Pavir.Ha01200 I 0.000
Pavir.Ha01264 Panicum virgatum Pavir.Ha01264 I 0.000
Pavir.Hb01074 Panicum virgatum Pavir.Hb01074 I 0.000
Pavir.Hb01336 Panicum virgatum Pavir.Hb01336 I 0.000
Pavir.Ib03413 Panicum virgatum Pavir.Ib03413 I 0.000
Pavir.J01078 Panicum virgatum Pavir.J01078 I 0.000
Pavir.J02630 Panicum virgatum Pavir.J02630 I 0.000
Pavir.J17768 Panicum virgatum Pavir.J17768 I 0.000
Pavir.J28684 Panicum virgatum Pavir.J28684 I 0.000
Pavir.J30299 Panicum virgatum Pavir.J30299 I 0.000
Pavir.J37124 Panicum virgatum Pavir.J37124 I 0.000
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.000
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.000
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.000
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.000
Pm009382 Prunus mume Pm009382 I 0.000
Pm020604 Prunus mume Pm020604 I 0.000
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.000
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.000
29680.m001678 Ricinus communis 29680.m001678 I 0.000
29895.m000321 Ricinus communis 29895.m000321 I 0.000
29900.m001561 Ricinus communis 29900.m001561 I 0.000
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.000
SapurV1A.0132s0310 Salix purpurea SapurV1A.0132s0310 I 0.000
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.000
Si027485m.g Setaria italica Si027485m.g I 0.000
Si028088m.g Setaria italica Si028088m.g I 0.000
Si028219m.g Setaria italica Si028219m.g I 0.000
Si031946m.g Setaria italica Si031946m.g I 0.000
Si032815m.g Setaria italica Si032815m.g I 0.000
Si033089m.g Setaria italica Si033089m.g I 0.000
Sb02g005810 Sorghum bicolor Sb02g005810 I 0.000
Sb02g005840 Sorghum bicolor Sb02g005840 I 0.000
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.000
Sb05g022110 Sorghum bicolor Sb05g022110 I 0.000
Sb05g026843 Sorghum bicolor Sb05g026843 I 0.000
TCM_004052 Theobroma cacao TCM_004052 I 0.000
TCM_020871 Theobroma cacao TCM_020871 I 0.000
Traes_2AL_9E90C2488 Triticum aestivum Traes_2AL_9E90C2488 N 0.000
Traes_2BL_304012B04 Triticum aestivum Traes_2BL_304012B04 N 0.000
Traes_2BL_3A3353970 Triticum aestivum Traes_2BL_3A3353970 N 0.000
Traes_2BS_0EE99D4A6 Triticum aestivum Traes_2BS_0EE99D4A6 I 0.000
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.000
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.000
Traes_4AS_9450AD3F4 Triticum aestivum Traes_4AS_9450AD3F4 I 0.000
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.000
Traes_4DL_CB92B5ABB Triticum aestivum Traes_4DL_CB92B5ABB I 0.000
Traes_4DS_9C01B536B Triticum aestivum Traes_4DS_9C01B536B I 0.000
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.000
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.000
TRIUR3_16508 Triticum urartu TRIUR3_16508 I 0.000
TRIUR3_29784 Triticum urartu TRIUR3_29784 I 0.000
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.000
VIT_07s0005g03230 Vitis vinifera VIT_07s0005g03230 I 0.000
VIT_07s0005g03260 Vitis vinifera VIT_07s0005g03260 I 0.000
VIT_07s0005g03270 Vitis vinifera VIT_07s0005g03270 I 0.000
VIT_14s0081g00730 Vitis vinifera VIT_14s0081g00730 I 0.000
AC233933.1_FG001 Zea mays AC233933.1_FG001 I 0.000
GRMZM2G073258 Zea mays GRMZM2G073258 I 0.000
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.000
GRMZM2G379652 Zea mays GRMZM2G379652 I 0.000
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.000
GRMZM5G837876 Zea mays GRMZM5G837876 I 0.000