TC030468 (Tribolium castaneum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TC030468 T223878_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.867 0.964
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.867 0.964
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.867 0.964
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.867 0.964
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.867 0.964
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.867 0.964
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.867 0.964
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.867 0.964
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.866 0.945
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.866 0.945
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.866 0.945
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.866 0.945
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.866 0.945
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.866 0.945
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.866 0.945
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.864 0.927
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.864 0.927
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.864 0.927
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.864 0.927
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.864 0.927
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.864 0.927
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.864 0.927
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.864 0.927
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.864 0.927
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.864 0.927
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.691
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.691
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.691
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.691
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.691
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.691
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.691
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.691
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.691
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.691
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC030468-PA Homeodomain 175 229

Links

Other Homeodomain family TFs
Other Tribolium castaneum TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32479 Aegilops tauschii F775_32479 I 0.000
F775_28711 Aegilops tauschii F775_28711 I 0.000
F775_17024 Aegilops tauschii F775_17024 I 0.000
AMTR_s00152p00081700 Amborella trichopoda AMTR_s00152p00081700 I 0.000
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.000
AREB3 Arabidopsis lyrata scaffold_502836.1 I 0.000
BZIP27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3003160 I 0.000
FD Arabidopsis lyrata Al_scaffold_0007_453 I 0.000
FD Arabidopsis thaliana AT4G35900 I 0.000
DPBF3 Arabidopsis thaliana AT3G56850 D 0.000
ATBZIP27 Arabidopsis thaliana AT2G17770 I 0.000
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I 0.000
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I 0.000
PK24978.1 Cannabis sativa PK24978.1 D 0.000
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I 0.000
Carubv10006580m.g Capsella rubella Carubv10006580m.g I 0.000
Cla009066 Citrullus lanatus Cla009066 I 0.000
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I 0.000
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I 0.000
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I 0.000
Thhalv10023128m.g Eutrema salsugineum Thhalv10023128m.g N 0.000
gene14556-v1.0-hybrid Fragaria vesca gene14556-v1.0-hybrid I 0.000
GLYMA19G30230 Glycine max GLYMA19G30230 I 0.000
GLYMA15G35080 Glycine max GLYMA15G35080 I 0.000
GLYMA03G00580 Glycine max GLYMA03G00580 I 0.000
Gorai.007G191800 Gossypium raimondii Gorai.007G191800 I 0.000
Gorai.003G007000 Gossypium raimondii Gorai.003G007000 N 0.000
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.000
MLOC_6534 Hordeum vulgare MLOC_6534 I 0.000
MLOC_4554 Hordeum vulgare MLOC_4554 I 0.000
MLOC_16096 Hordeum vulgare MLOC_16096 I 0.000
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.000
chr2.CM0695.170.nc Lotus japonicus chr2.CM0695.170.nc I 0.000
MDP0000740787 Malus domestica MDP0000740787 I 0.000
MDP0000273211 Malus domestica MDP0000273211 I 0.000
MDP0000169473 Malus domestica MDP0000169473 N 0.000
MTR_7g088090 Medicago truncatula MTR_7g088090 I 0.000
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I 0.000
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.000
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I 0.000
OBART01G37980 Oryza barthii OBART01G37980 I 0.000
OB01G46760 Oryza brachyantha OB01G46760 I 0.000
OB01G43630 Oryza brachyantha OB01G43630 I 0.000
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.000
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I 0.000
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.000
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.000
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.000
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.000
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.000
OPUNC05G18710 Oryza punctata OPUNC05G18710 I 0.000
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.000
OS01G0859300 Oryza sativa OS01G0859300 I 0.000
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.000
Pavir.Ib01001 Panicum virgatum Pavir.Ib01001 I 0.000
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I 0.000
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I 0.000
SapurV1A.0025s0010 Salix purpurea SapurV1A.0025s0010 I 0.000
SapurV1A.0016s1330 Salix purpurea SapurV1A.0016s1330 I 0.000
SELMODRAFT_227594 Selaginella moellendorffii SELMODRAFT_227594 I 0.000
SELMODRAFT_451399 Selaginella moellendorffii SELMODRAFT_451399 I 0.000
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I 0.000
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I 0.000
Si022639m.g Setaria italica Si022639m.g I 0.000
Si001731m.g Setaria italica Si001731m.g I 0.000
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I 0.000
Solyc02g083520.2 Solanum lycopersicum Solyc02g083520.2 I 0.000
PGSC0003DMG400023897 Solanum tuberosum PGSC0003DMG400023897 N 0.000
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I 0.000
Sb01g036810 Sorghum bicolor Sb01g036810 I 0.000
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.000
TCM_000152 Theobroma cacao TCM_000152 I 0.000
TCM_044596 Theobroma cacao TCM_044596 I 0.000
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I 0.000
Traes_1AL_1FFBFB058 Triticum aestivum Traes_1AL_1FFBFB058 I 0.000
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I 0.000
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I 0.000
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.000
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.000
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.000
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I 0.000
Traes_1BL_DE2CF9613 Triticum aestivum Traes_1BL_DE2CF9613 I 0.000
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.000
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.000
TRIUR3_24203 Triticum urartu TRIUR3_24203 I 0.000
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.000
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.000