Alligator_sinensis_CCG002857.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG002857.1 T225164_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG002857.1 Homeodomain 199 257

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014972 Ailuropoda melanoleuca ENSAMEG00000014972 I 0.000
ENSAPLG00000013833 Anas platyrhynchos ENSAPLG00000013833 I 0.000
MSANTD3 Anolis carolinensis ENSACAG00000025458 I 0.000
Afo_R015982 Aptenodytes forsteri Afo_R015982 I 0.000
ENSBTAP00000042141-D1 Bos grunniens ENSBTAP00000042141-D1 I 0.000
MSANTD3 Bos taurus ENSBTAG00000037580 I 0.000
MSANTD3-TMEFF1 Callithrix jacchus ENSCJAG00000011484 I 0.000
Aan_R010550 Calypte anna Aan_R010550 I 0.000
MSANTD3-TMEFF1 Canis familiaris ENSCAFG00000002577 I 0.000
Cmyd_10021233 Chelonia mydas Cmyd_10021233 I 0.000
ENSCSAG00000011159 Chlorocebus sabaeus ENSCSAG00000011159 I 0.000
MSANTD3 Dasypus novemcinctus ENSDNOG00000035872 I 0.000
MSANTD3 Equus caballus ENSECAG00000021233 I 0.000
MSANTD3-TMEFF1 Felis catus ENSFCAG00000030912 I 0.000
ENSFALG00000004875 Ficedula albicollis ENSFALG00000004875 I 0.000
MSANTD3 Gallus gallus ENSGALG00000013403 I 0.000
Gfo_R006190 Geospiza fortis Gfo_R006190 I 0.000
ENSGGOG00000026943 Gorilla gorilla ENSGGOG00000026943 I 0.000
MSANTD3 Homo sapiens ENSG00000066697 D 0.000
ENSSTOG00000026763 Ictidomys tridecemlineatus ENSSTOG00000026763 I 0.000
MSANTD3 Loxodonta africana ENSLAFG00000031827 I 0.000
ENSP00000364022 Macaca fascicularis ENSP00000364022 I 0.000
MSANTD3-TMEFF1 Macaca mulatta ENSMMUG00000009775 I 0.000
MSANTD3 Monodelphis domestica ENSMODG00000012608 I 0.000
ENSMPUG00000006828 Mustela putorius furo ENSMPUG00000006828 I 0.000
Msantd3 Mus musculus ENSMUSG00000039693 I 0.000
MSANTD3 Myotis lucifugus ENSMLUG00000029223 I 0.000
ENSNLEG00000017101 Nomascus leucogenys ENSNLEG00000017101 I 0.000
Ogr12786 Ophisaurus gracilis Ogr12786 I 0.000
MSANTD3 Ornithorhynchus anatinus ENSOANG00000002115 I 0.000
MSANTD3-TMEFF1 Oryctolagus cuniculus ENSOCUG00000006373 I 0.000
MSANTD3 Otolemur garnettii ENSOGAG00000024703 I 0.000
ENSOARG00000007598 Ovis aries ENSOARG00000007598 I 0.000
MSANTD3 Pan troglodytes ENSPTRG00000038720 I 0.000
Pvit_18499 Pogona vitticeps Pvit_18499 I 0.000
ENSPPYG00000019447 Pongo abelii ENSPPYG00000019447 I 0.000
Msantd3 Rattus norvegicus ENSRNOG00000008159 I 0.000
ENSSHAG00000009700 Sarcophilus harrisii ENSSHAG00000009700 I 0.000
ENSSSCG00000005390 Sus scrofa ENSSSCG00000005390 I 0.000
MSANTD3 Taeniopygia guttata ENSTGUG00000008752 I 0.000
Tal_R010083 Tyto alba Tal_R010083 I 0.000
msantd3.L Xenopus laevis XB-GENE-5737853 I 0.000
msantd3 Xenopus tropicalis XB-GENE-5737820 I 0.000