Myotis_brandtii_RX1_10024726 (Myotis brandtii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Myotis_brandtii_RX1_10024726 T226441_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Obox6
M00490_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Obox6_3440 		0.659 0.404
ceh-53
M00679_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10699 		0.646 0.439
ceh-37
M00674_2.00 		Caenorhabditis elegans
HTAATCYN
NRGATTAD		 PBM
Narasimhan et al.(2015)
pTH10716 		0.639 0.404
Dmbx1
M00441_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Dmbx1_2277 		0.638 0.404
DMBX1
M03236_2.00 		Homo sapiens
NHTAATCCBN
NVGGATTADN		 SELEX
Jolma et al.(2013)
DMBX1_1 		0.638 0.404
DMBX1
M05383_2.00 		Homo sapiens
NTAATCSN
NSGATTAN		 SELEX
Yin et al.(2017)
DMBX1_eDBD_HT-SELEX 		0.638 0.404
DMBX1
M05384_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
DMBX1_eDBD_Methyl-HT-SELEX 		0.638 0.404
NEMVEDRAFT_v1g113057
M02144_2.00 		Nematostella vectensis
NYTAATCCBN
NVGGATTARN		 PBM
Weirauch et al.(2014)
pTH6135 		0.636 0.351
CRX
M00274_2.00 		Homo sapiens
NMTAATCCSN
NSGGATTAKN		 PBM
Barrera et al.(2016)
CRX_REF 		0.633 0.386
Otx1
M00396_2.00 		Mus musculus
NTAAKCYN
NRGMTTAN		 PBM
Berger et al.(2008)
Otx1_2325 		0.633 0.386
Otx2
M00418_2.00 		Mus musculus
NTAAKMBN
NVKMTTAN		 PBM
Berger et al.(2008)
Otx2_3441 		0.633 0.386
Crx
M00489_2.00 		Mus musculus
NWAAKMBN
NVKMTTWN		 PBM
Berger et al.(2008)
Crx_3485 		0.633 0.386
OTX1
M03116_2.00 		Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
OTX1_1 		0.633 0.386
OTX1
M03117_2.00 		Homo sapiens
NTAATCSB
VSGATTAN		 SELEX
Jolma et al.(2013)
OTX1_2 		0.633 0.386
OTX2
M03197_2.00 		Homo sapiens
NHTAAKCGGATTANN
NNTAATCCGMTTADN		 SELEX
Jolma et al.(2013)
OTX2_1 		0.633 0.386
OTX2
M03198_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Jolma et al.(2013)
OTX2_2 		0.633 0.386
Otx1
M03249_2.00 		Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
Otx1_1 		0.633 0.386
Otx1
M03250_2.00 		Mus musculus
NTAATCCN
NGGATTAN		 SELEX
Jolma et al.(2013)
Otx1_2 		0.633 0.386
oc
M03808_2.00 		Drosophila melanogaster
HTAATCCB
VGGATTAD		 SELEX
Nitta et al.(2015)
oc_1 		0.633 0.386
CRX
M04949_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX 		0.633 0.386
OTX1
M05022_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX 		0.633 0.386
OTX1
M05024_2.00 		Homo sapiens
NTAATCCNNN
NNNGGATTAN		 SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX 		0.633 0.386
OTX2
M05251_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX 		0.633 0.386
oc
M06502_2.00 		Drosophila melanogaster
TAATCC
GGATTA		 B1H
Mathelier et al.(2014)
MA0234.1 		0.633 0.386
oc
M06282_2.00 		Drosophila melanogaster
WTAATCC
GGATTAW		 B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102 		0.633 0.386
oc
M06283_2.00 		Drosophila melanogaster
NTAATCCB
VGGATTAN		 B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102 		0.633 0.386
Crx
M08139_2.00 		Mus musculus
YTAATCCYCYY
RRGRGGATTAR		 ChIP-seq
Mathelier et al.(2014)
MA0467.1 		0.633 0.386
CRX
M09132_2.00 		Homo sapiens
BYTAATCCBHYYN
NRRDVGGATTARV		 Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B 		0.633 0.386
OTX2
M09153_2.00 		Homo sapiens
BYTAATCCYYN
NRRGGATTARV		 Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A 		0.633 0.386
Crx
M09208_2.00 		Mus musculus
BYTAATCCBHYYN
NRRDVGGATTARV		 Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A 		0.633 0.386
Otx2
M09183_2.00 		Mus musculus
HTAATCCYNYNN
NNRNRGGATTAD		 Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A 		0.633 0.386
Crx
M09577_2.00 		Mus musculus
NYTAATCC
GGATTARN		 Misc
Heinz et al.(2010)
Retina-Crx_GSE20012 		0.633 0.386
Otx2
M09569_2.00 		Mus musculus
NHTAATCCHB
VDGGATTADN		 Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098 		0.633 0.386
oc
M09681_2.00 		Drosophila melanogaster
HTAATCCN
NGGATTAD		 Misc
Kulakovskiy et al.(2009)
oc 		0.633 0.386
CRX
M10647_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CRX_Q4_01 		0.633 0.386
CRX
M10648_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CRX_Q4_02 		0.633 0.386
OTX1
M10673_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX1_Q5 		0.633 0.386
OTX2
M10727_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX2_Q3_01 		0.633 0.386
OTX2
M10728_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX2_Q3 		0.633 0.386
CRX
M00271_2.00 		Homo sapiens
NHDAKNN
NNMTHDN		 PBM
Barrera et al.(2016)
CRX_R41Q 		0.633 0.386
CRX
M00272_2.00 		Homo sapiens
NNHNATNN
NNATNDNN		 PBM
Barrera et al.(2016)
CRX_R41W 		0.633 0.386
CRX
M00273_2.00 		Homo sapiens
NNYTAATCCVN
NBGGATTARNN		 PBM
Barrera et al.(2016)
CRX_R90W 		0.633 0.386
CRX
M00275_2.00 		Homo sapiens
NMTAATCCSN
NSGGATTAKN		 PBM
Barrera et al.(2016)
CRX_V66I 		0.633 0.386
CRX
M04950_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX 		0.633 0.386
OTX1
M05023_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX 		0.633 0.386
OTX1
M05025_2.00 		Homo sapiens
HTAATCCNHN
NDNGGATTAD		 SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX 		0.633 0.386
OTX2
M05252_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX 		0.633 0.386
HBX4_ECHGR
M02195_2.00 		Echinococcus granulosus
NHTAATCYNN
NNRGATTADN		 PBM
Weirauch et al.(2014)
pTH6301 		0.631 0.386
ceh-36
M00673_2.00 		Caenorhabditis elegans
NWAATCYN
NRGATTWN		 PBM
Narasimhan et al.(2015)
pTH10730 		0.629 0.421
Gsc
M00411_2.00 		Mus musculus
NNTAATYBN
NVRATTANN		 PBM
Berger et al.(2008)
Gsc_2327 		0.626 0.404
GSC
M03146_2.00 		Homo sapiens
NHTAATCCNH
DNGGATTADN		 SELEX
Jolma et al.(2013)
GSC_1 		0.626 0.404
GSC
M05134_2.00 		Homo sapiens
NTAATCCB
VGGATTAN		 SELEX
Yin et al.(2017)
GSC_eDBD_HT-SELEX 		0.626 0.404
GSC
M05136_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_HT-SELEX 		0.626 0.404
gsc
M09584_2.00 		Xenopus tropicalis
NTAATCYN
NRGATTAN		 Misc
Heinz et al.(2010)
FrogEmbryos-GSC_DRA000576 		0.626 0.404
GSC
M05135_2.00 		Homo sapiens
HTAATCCB
VGGATTAD		 SELEX
Yin et al.(2017)
GSC_eDBD_Methyl-HT-SELEX 		0.626 0.404
GSC
M05137_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
GSC_FL_Methyl-HT-SELEX 		0.626 0.404
Obox3
M00523_2.00 		Mus musculus
NWWATMN
NKATWWN		 PBM
Berger et al.(2008)
Obox3_3439 		0.613 0.386
Obox1
M00515_2.00 		Mus musculus
NTAATCYNNN
NNNRGATTAN		 PBM
Berger et al.(2008)
Obox1_3970 		0.613 0.368
Obox5
M00527_2.00 		Mus musculus
NTWATHNN
NNDATWAN		 PBM
Berger et al.(2008)
Obox5_2284 		0.613 0.368
Obox5
M00528_2.00 		Mus musculus
NWDATHNN
NNDATHWN		 PBM
Berger et al.(2008)
Obox5_3963 		0.613 0.368
CRX
M00270_2.00 		Homo sapiens
NWDAKNN
NNMTHWN		 PBM
Barrera et al.(2016)
CRX_E80A 		0.612 0.368
Gsc
M02120_2.00 		Drosophila melanogaster
NTAATCYN
NRGATTAN		 PBM
Weirauch et al.(2014)
pTH5511 		0.609 0.421
Gsc
M03817_2.00 		Drosophila melanogaster
TAATCCB
VGGATTA		 SELEX
Nitta et al.(2015)
Gsc_1 		0.609 0.421
Gsc
M03818_2.00 		Drosophila melanogaster
TAATCGGATTA
TAATCCGATTA		 SELEX
Nitta et al.(2015)
Gsc_2 		0.609 0.421
Gsc
M03819_2.00 		Drosophila melanogaster
TAATCYNHTAATCBN
NVGATTADNRGATTA		 SELEX
Nitta et al.(2015)
Gsc_3 		0.609 0.421
Gsc
M03820_2.00 		Drosophila melanogaster
TAATCGGATTA
TAATCCGATTA		 SELEX
Nitta et al.(2015)
Gsc_4 		0.609 0.421
Gsc
M03821_2.00 		Drosophila melanogaster
TAATCYNWTWATCYB
VRGATWAWNRGATTA		 SELEX
Nitta et al.(2015)
Gsc_5 		0.609 0.421
Gsc
M05873_2.00 		Drosophila melanogaster
TAATCSNHTWA
TWADNSGATTA		 SMiLE-seq
Isakova et al.(2017)
Gsc 		0.609 0.421
Gsc
M06509_2.00 		Drosophila melanogaster
TAATCY
RGATTA		 B1H
Mathelier et al.(2014)
MA0190.1 		0.609 0.421
Gsc
M06297_2.00 		Drosophila melanogaster
VNTAATCY
RGATTANB		 B1H
Zhu et al.(2011)
Gsc_Cell_FBgn0010323 		0.609 0.421
Gsc
M06298_2.00 		Drosophila melanogaster
NTAATCY
RGATTAN		 B1H
Zhu et al.(2011)
Gsc_SOLEXA_FBgn0010323 		0.609 0.421
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_RX1_10024726 Homeodomain 21 77

Links

Other Homeodomain family TFs
Other Myotis brandtii TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I
ASR3 Arabidopsis thaliana AT2G33550 D
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I
Bo4g043600 Brassica oleracea Bo4g043600 I
Bo4g182020 Brassica oleracea Bo4g182020 I
Bra021860 Brassica rapa Bra021860 I
Bra005486 Brassica rapa Bra005486 I
PK25885.1 Cannabis sativa PK25885.1 I
Carubv10023675m.g Capsella rubella Carubv10023675m.g I
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I
Cla001502 Citrullus lanatus Cla001502 I
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I
Cucsa.349220 Cucumis sativus Cucsa.349220 I
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I
GLYMA08G28880 Glycine max GLYMA08G28880 I
GLYMA18G51790 Glycine max GLYMA18G51790 I
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I
MDP0000232058 Malus domestica MDP0000232058 I
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I
cassava40545.m1 Manihot esculenta cassava40545.m1 I
mgf009760m Mimulus guttatus mgf009760m I
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I
Pm024597 Prunus mume Pm024597 I
30128.m008552 Ricinus communis 30128.m008552 I
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I