Pm001037 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm001037 T226625_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.982
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.982
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.982
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm001037 Homeodomain 24 83

Links

Other Homeodomain family TFs
Other Prunus mume TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005407 Ailuropoda melanoleuca ENSAMEG00000005407 I
ENSAPLG00000002762 Anas platyrhynchos ENSAPLG00000002762 I
ZBTB20 Anolis carolinensis ENSACAG00000009851 I
Afo_R013084 Aptenodytes forsteri Afo_R013084 I
ENSP00000419153-D1 Bos grunniens ENSP00000419153-D1 I
ZBTB20 Bos taurus ENSBTAG00000011928 I
Brh_R009865 Buceros rhinoceros Brh_R009865 I
ZBTB20 Callithrix jacchus ENSCJAG00000009211 I
Aan_R001234 Calypte anna Aan_R001234 I
ZBTB20 Canis familiaris ENSCAFG00000010823 I
ZBTB20 Cavia porcellus ENSCPOG00000021801 I
Cmyd_10014359 Chelonia mydas Cmyd_10014359 I
ENSCSAG00000006941 Chlorocebus sabaeus ENSCSAG00000006941 I
ZBTB20 Dasypus novemcinctus ENSDNOG00000042525 I
Zbtb20 Dipodomys ordii ENSDORG00000008535 I
ZBTB20 Echinops telfairi ENSETEG00000013007 I
ZBTB20 Equus caballus ENSECAG00000015809 I
ZBTB20 Erinaceus europaeus ENSEEUG00000005612 I
ZBTB20 Felis catus ENSFCAG00000022767 I
ENSFALG00000006027 Ficedula albicollis ENSFALG00000006027 I
ZBTB20 Gallus gallus ENSGALG00000015094 I
zbtb20 Gasterosteus aculeatus ENSGACG00000020693 I
Gfo_R000202 Geospiza fortis Gfo_R000202 I
ZBTB20 Gorilla gorilla ENSGGOG00000025065 I
ZBTB20 Homo sapiens ENSG00000181722 D
ENSSTOG00000001832 Ictidomys tridecemlineatus ENSSTOG00000001832 I
ENSMMUP00000039977 Macaca fascicularis ENSMMUP00000039977 I
ZBTB20 Meleagris gallopavo ENSMGAG00000014320 I
ZBTB20 Microcebus murinus ENSMICG00000008815 I
ZBTB20 Monodelphis domestica ENSMODG00000018181 I
ENSMPUG00000000272 Mustela putorius furo ENSMPUG00000000272 I
Zbtb20 Mus musculus ENSMUSG00000022708 I
Myotis_brandtii_ZBTB20_10031765 Myotis brandtii Myotis_brandtii_ZBTB20_10031765 I
ZBTB20 Myotis lucifugus ENSMLUG00000014239 I
Ogr18740 Ophisaurus gracilis Ogr18740 I
ZBTB20 Oryctolagus cuniculus ENSOCUG00000004232 I
ENSORLG00000006797 Oryzias latipes ENSORLG00000006797 I
ZBTB20 Otolemur garnettii ENSOGAG00000029972 I
ZBTB20 Pan troglodytes ENSPTRG00000015244 I
ENSPANG00000015935 Papio anubis ENSPANG00000015935 I
Pvit_00937 Pogona vitticeps Pvit_00937 I
ENSPPYG00000013526 Pongo abelii ENSPPYG00000013526 I
Zbtb20 Rattus norvegicus ENSRNOG00000056716 I
ENSSHAG00000009719 Sarcophilus harrisii ENSSHAG00000009719 I
ZBTB20 Sorex araneus ENSSARG00000013404 I
ZBTB20 Sus scrofa ENSSSCG00000026113 I
ENSSSCG00000021456 Sus scrofa ENSSSCG00000021456 I
ZBTB20 Taeniopygia guttata ENSTGUG00000013404 I
zbtb20 Takifugu rubripes ENSTRUG00000016839 I
ENSTSYG00000009685 Tarsius syrichta ENSTSYG00000009685 I
zbtb20 Tetraodon nigroviridis ENSTNIG00000010038 I
ZBTB20 Tupaia belangeri ENSTBEG00000016630 I
XP_002939695 Xenopus tropicalis XP_002939695 I