cassava27173.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava27173.m1 T227086_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.604 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava27173.m1 Homeodomain 507 563

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.636
PRH Arabidopsis thaliana AT4G29940 I 0.626
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.680
Bo1g014710 Brassica oleracea Bo1g014710 I 0.639
Bo3g175850 Brassica oleracea Bo3g175850 I 0.669
Bra010310 Brassica rapa Bra010310 I 0.669
Bra011153 Brassica rapa Bra011153 I 0.647
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.669
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.669
Ca_08838 Cicer arietinum Ca_08838 I 0.649
Cla019142 Citrullus lanatus Cla019142 N 0.602
Ciclev10007587m.g Citrus clementina Ciclev10007587m.g N 0.685
orange1.1g006754m.g Citrus sinensis orange1.1g006754m.g N 0.685
Cucsa.081360 Cucumis sativus Cucsa.081360 N 0.602
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.709
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.680
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.749
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.710
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.716
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.710
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.748
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.825
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.693
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.604
mgf003961m Mimulus guttatus mgf003961m I 0.682
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.771
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.771
Pm008905 Prunus mume Pm008905 I 0.769
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.769
29671.m000294 Ricinus communis 29671.m000294 I 0.750
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.672