Bostr.7867s0841 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.7867s0841 T228158_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.683 0.732
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0841.1.p Homeodomain 453 508
Bostr.7867s0841.2.p Homeodomain 280 335

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD4 Arabidopsis lyrata scaffold_503585.1 N
MBD1 Arabidopsis lyrata scaffold_702078.1 N
MBD1 Arabidopsis thaliana AT4G22745 N
MBD4 Arabidopsis thaliana AT3G63030 N
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N
Bo4g098290 Brassica oleracea Bo4g098290 N
Bo8g098350 Brassica oleracea Bo8g098350 N
Bra007723 Brassica rapa Bra007723 N
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N
Carubv10018085m.g Capsella rubella Carubv10018085m.g N
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N
GLYMA10G02860 Glycine max GLYMA10G02860 N
GLYMA02G16930 Glycine max GLYMA02G16930 N
Lus10027980.g Linum usitatissimum Lus10027980.g N
Lus10029631.g Linum usitatissimum Lus10029631.g N
Lus10042674.g Linum usitatissimum Lus10042674.g N
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N
29703.m001533 Ricinus communis 29703.m001533 N
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N