Cagra.1561s0012 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1561s0012 T228213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.867 1.000
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.867 1.000
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.867 1.000
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.867 1.000
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.825
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.807
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.789
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.789
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.789
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.772
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.772
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.772
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.772
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.772
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.772
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.667
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.667
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.684
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.684
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.807
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.807
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.772
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1561s0012.1.p Homeodomain 67 123

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

800 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I
AAEL004707 Aedes aegypti AAEL004707 I
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I
Alligator_sinensis_CCG013675.1 Alligator sinensis Alligator_sinensis_CCG013675.1 I
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I
HHEX Anolis carolinensis ENSACAG00000006660 I
AARA001840 Anopheles arabiensis AARA001840 I
AATE006277 Anopheles atroparvus AATE006277 I
ACHR001525 Anopheles christyi ACHR001525 I
ACOM034050 Anopheles coluzzii ACOM034050 I
ACUA024331 Anopheles culicifacies ACUA024331 I
ADIR002846 Anopheles dirus ADIR002846 I
AEPI001110 Anopheles epiroticus AEPI001110 I
AFAF018650 Anopheles farauti AFAF018650 I
AFUN007808 Anopheles funestus AFUN007808 I
AGAP001389 Anopheles gambiae AGAP001389 I
AMAM015319 Anopheles maculatus AMAM015319 I
AMEC012825 Anopheles melas AMEC012825 I
AMEM017315 Anopheles merus AMEM017315 I
AMIN000568 Anopheles minimus AMIN000568 I
AQUA006568 Anopheles quadriannulatus AQUA006568 I
ASIS014034 Anopheles sinensis ASIS014034 I
ASTEI07538 Anopheles stephensi ASTEI07538 I
Afo_R002655 Aptenodytes forsteri Afo_R002655 I
ASU_02199 Ascaris suum ASU_02199 I
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I
BGIBMGA010054 Bombyx mori BGIBMGA010054 I
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I
HHEX Bos taurus ENSBTAG00000014217 I
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I
Bm5107 Brugia malayi Bm5107 I
BTMF_0001400701 Brugia timori BTMF_0001400701 I
Brh_R009926 Buceros rhinoceros Brh_R009926 I
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I
CBN29205 Caenorhabditis brenneri CBN29205 I
CBG08137 Caenorhabditis briggsae CBG08137 I
pha-2 Caenorhabditis elegans WBGene00004011 D
CRE17126 Caenorhabditis remanei CRE17126 I
HHEX Callithrix jacchus ENSCJAG00000008627 I
Aan_R007509 Calypte anna Aan_R007509 I
HHEX Canis familiaris ENSCAFG00000007502 I
CapteG110019 Capitella teleta CapteG110019 I
CapteG129537 Capitella teleta CapteG129537 I
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I
HHEX Choloepus hoffmanni ENSCHOG00000005837 I
hex Ciona intestinalis ENSCING00000001270 I
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I
CGI_10025054 Crassostrea gigas CGI_10025054 I
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I
CPIJ003318 Culex quinquefasciatus CPIJ003318 I
KGM_13906 Danaus plexippus KGM_13906 I
CABZ01079847.1 Danio rerio ENSDARG00000098231 I
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I
HHEX Dasypus novemcinctus ENSDNOG00000041940 I
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I
DME_0000899101 Dracunculus medinensis DME_0000899101 I
GF18520 Drosophila ananassae FBgn0095538 I
GG14915 Drosophila erecta FBgn0107169 I
GH19308 Drosophila grimshawi FBgn0126773 I
HHEX Drosophila melanogaster FBgn0038852 D
GI23524 Drosophila mojavensis FBgn0146250 I
GL12681 Drosophila persimilis FBgn0150287 I
GA20065 Drosophila pseudoobscura FBgn0080061 I
GM15106 Drosophila sechellia FBgn0170026 I
GD20010 Drosophila simulans FBgn0191493 I
GJ10276 Drosophila virilis FBgn0197562 I
GK13080 Drosophila willistoni FBgn0215089 I
HHEX Echinops telfairi ENSETEG00000009524 N
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N
HHEX Felis catus ENSFCAG00000023875 I
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I
HHEX Gasterosteus aculeatus ENSGACG00000015385 I
Gfo_R002376 Geospiza fortis Gfo_R002376 I
GPLIN_000004000 Globodera pallida GPLIN_000004000 I
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I
ENSGGOG00000027676 Gorilla gorilla ENSGGOG00000027676 I
HCOI01904700 Haemonchus contortus HCOI01904700 I
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I
HMEL004646 Heliconius melpomene HMEL004646 I
HelroG80789 Helobdella robusta HelroG80789 I
HHEX Homo sapiens ENSG00000152804 I
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I
LOAG_11830 Loa loa LOAG_11830 I
LotgiG128951 Lottia gigantea LotgiG128951 I
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I
LCUP007736 Lucilia cuprina LCUP007736 I
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I
ENSP00000282728 Macaca fascicularis ENSP00000282728 I
HHEX Macaca mulatta ENSMMUG00000011789 I
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I
MESCA008304 Megaselia scalaris MESCA008304 I
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I
ENSMICG00000014969 Microcebus murinus ENSMICG00000014969 N
HHEX Monodelphis domestica ENSMODG00000006444 I
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I
Hhex Mus musculus ENSMUSG00000024986 I
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I
HHEX Ochotona princeps ENSOPRG00000003896 I
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I
WBGene00240685 Onchocerca volvulus WBGene00240685 I
Ogr00908 Ophisaurus gracilis Ogr00908 I
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I
HHEX Otolemur garnettii ENSOGAG00000015201 I
HHEX Pan troglodytes ENSPTRG00000002760 I
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I
Pvit_14369 Pogona vitticeps Pvit_14369 I
ENSPPYG00000002486 Pongo abelii ENSPPYG00000002486 I
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I
HHEX Pteropus vampyrus ENSPVAG00000007094 I
Hhex Rattus norvegicus ENSRNOG00000016595 I
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I
L596_g25649 Steinernema carpocapsae L596_g25649 I
L889_g29725 Steinernema feltiae L889_g29725 I
L898_g1404 Steinernema monticolum L898_g1404 I
L892_g7017 Steinernema scapterisci L892_g7017 I
SMAR000779 Strigamia maritima SMAR000779 I
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I
HHEX Takifugu rubripes ENSTRUG00000004234 I
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I
tetur29g00560 Tetranychus urticae tetur29g00560 I
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I
TC004555 Tribolium castaneum TC004555 I
TriadG9560 Trichoplax adhaerens TriadG9560 I
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I
HHEX Tursiops truncatus ENSTTRG00000012365 I
Tal_R011621 Tyto alba Tal_R011621 I
HHEX Vicugna pacos ENSVPAG00000009916 I
WUBG_10995 Wuchereria bancrofti WUBG_10995 I
hhex.L Xenopus laevis XB-GENE-865680 I
hhex Xenopus tropicalis XB-GENE-487159 I
L798_02156 Zootermopsis nevadensis L798_02156 I