Gorai.001G108900 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.001G108900 T228663_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WUS
M06905_2.00 		Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA		 Dap-seq
OMalley et al.(2016)
WUS1_col_a 		0.747 0.714
WUS
M06906_2.00 		Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA		 Dap-seq
OMalley et al.(2016)
WUS1_colamp_a 		0.747 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G108900.1 Homeodomain 49 109

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N
AGL62 Arabidopsis thaliana AT5G60440 I
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N
Bo1g112460 Brassica oleracea Bo1g112460 N
Bo5g113750 Brassica oleracea Bo5g113750 N
Bo9g142570 Brassica oleracea Bo9g142570 N
Bra002480 Brassica rapa Bra002480 N
Bra022434 Brassica rapa Bra022434 N
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N
Carubv10028580m.g Capsella rubella Carubv10028580m.g N
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N
Ca_04659 Cicer arietinum Ca_04659 N
Ca_04660 Cicer arietinum Ca_04660 N
Ca_04661 Cicer arietinum Ca_04661 N
Ca_04662 Cicer arietinum Ca_04662 N
Ca_04665 Cicer arietinum Ca_04665 N
Cla006571 Citrullus lanatus Cla006571 N
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N
Cucsa.298560 Cucumis sativus Cucsa.298560 N
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N
GLYMA02G30990 Glycine max GLYMA02G30990 N
GLYMA02G35080 Glycine max GLYMA02G35080 N
GLYMA10G10295 Glycine max GLYMA10G10295 N
GLYMA10G10610 Glycine max GLYMA10G10610 N
GLYMA10G10640 Glycine max GLYMA10G10640 N
GLYMA10G10690 Glycine max GLYMA10G10690 N
GLYMA10G10770 Glycine max GLYMA10G10770 N
GLYMA10G10840 Glycine max GLYMA10G10840 N
GLYMA10G10860 Glycine max GLYMA10G10860 N
GLYMA10G10900 Glycine max GLYMA10G10900 N
GLYMA10G10920 Glycine max GLYMA10G10920 N
GLYMA10G10930 Glycine max GLYMA10G10930 N
GLYMA10G12321 Glycine max GLYMA10G12321 N
GLYMA10G40080 Glycine max GLYMA10G40080 N
GLYMA13G39016 Glycine max GLYMA13G39016 N
GLYMA20G27320 Glycine max GLYMA20G27320 N
GLYMA20G27330 Glycine max GLYMA20G27330 N
GLYMA20G27341 Glycine max GLYMA20G27341 N
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N
MDP0000233925 Malus domestica MDP0000233925 N
MDP0000278770 Malus domestica MDP0000278770 N
MDP0000434703 Malus domestica MDP0000434703 I
cassava21387.m1 Manihot esculenta cassava21387.m1 N
cassava33542.m1 Manihot esculenta cassava33542.m1 N
MTR_1g012570 Medicago truncatula MTR_1g012570 N
MTR_1g075600 Medicago truncatula MTR_1g075600 N
MTR_1g077360 Medicago truncatula MTR_1g077360 N
MTR_1g105905 Medicago truncatula MTR_1g105905 N
MTR_1g105910 Medicago truncatula MTR_1g105910 N
MTR_1g105920 Medicago truncatula MTR_1g105920 N
MTR_1g108510 Medicago truncatula MTR_1g108510 N
MTR_1g108580 Medicago truncatula MTR_1g108580 N
MTR_2g030740 Medicago truncatula MTR_2g030740 N
MTR_2g085250 Medicago truncatula MTR_2g085250 N
MTR_2g085280 Medicago truncatula MTR_2g085280 N
MTR_3g030770 Medicago truncatula MTR_3g030770 N
MTR_3g052870 Medicago truncatula MTR_3g052870 N
MTR_3g052920 Medicago truncatula MTR_3g052920 N
MTR_3g067875 Medicago truncatula MTR_3g067875 N
MTR_5g045560 Medicago truncatula MTR_5g045560 N
MTR_5g053390 Medicago truncatula MTR_5g053390 N
MTR_5g055100 Medicago truncatula MTR_5g055100 N
MTR_8g043650 Medicago truncatula MTR_8g043650 N
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N
Pm021071 Prunus mume Pm021071 N
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N
30099.m001672 Ricinus communis 30099.m001672 N
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N
TCM_006323 Theobroma cacao TCM_006323 N
TCM_040735 Theobroma cacao TCM_040735 N