MDP0000123097 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000123097 T228964_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.857 0.842
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.850 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.850 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.841 0.789
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.841 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.839 0.772
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.839 0.772
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.812 0.737
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.812 0.737
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.797 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.797 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.797 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.791 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.754 0.649
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.754 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000123097 Homeodomain 101 157

Links

Other Homeodomain family TFs
Other Malus domestica TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_24151 Aegilops tauschii F775_24151 I 0.000
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.000
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.000
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.000
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.000
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.000
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.000
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.000
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.000
BHLH80 Arabidopsis thaliana AT1G35460 D 0.000
BHLH122 Arabidopsis thaliana AT1G51140 D 0.000
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.000
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.000
BHLH81 Arabidopsis thaliana AT4G09180 I 0.000
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.000
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.000
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.000
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.000
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.000
Bo3g036400 Brassica oleracea Bo3g036400 I 0.000
Bo4g019620 Brassica oleracea Bo4g019620 I 0.000
Bo4g191390 Brassica oleracea Bo4g191390 I 0.000
Bo6g024810 Brassica oleracea Bo6g024810 I 0.000
Bo6g043840 Brassica oleracea Bo6g043840 I 0.000
Bo8g026850 Brassica oleracea Bo8g026850 I 0.000
Bra000291 Brassica rapa Bra000291 I 0.000
Bra004748 Brassica rapa Bra004748 I 0.000
Bra016886 Brassica rapa Bra016886 I 0.000
Bra018896 Brassica rapa Bra018896 I 0.000
Bra028088 Brassica rapa Bra028088 I 0.000
Bra036760 Brassica rapa Bra036760 I 0.000
PK06301.1 Cannabis sativa PK06301.1 I 0.000
PK07850.1 Cannabis sativa PK07850.1 I 0.000
PK14093.1 Cannabis sativa PK14093.1 I 0.000
PK18038.1 Cannabis sativa PK18038.1 I 0.000
PK20089.1 Cannabis sativa PK20089.1 I 0.000
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.000
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.000
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.000
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.000
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.000
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.000
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.000
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.000
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.000
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.000
evm.TU.contig_45766 Carica papaya evm.TU.contig_45766 I 0.000
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.000
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.000
Ca_02662 Cicer arietinum Ca_02662 I 0.000
Ca_14223 Cicer arietinum Ca_14223 I 0.000
Ca_26916 Cicer arietinum Ca_26916 I 0.000
Cla015469 Citrullus lanatus Cla015469 I 0.000
Cla017792 Citrullus lanatus Cla017792 I 0.000
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.000
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.000
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.000
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.000
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.000
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.000
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.000
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.000
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.000
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.000
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.000
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.000
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.000
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.000
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.000
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.000
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.000
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.000
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.000
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.000
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.000
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.000
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.000
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.000
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.000
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.000
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.000
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.000
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.000
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.000
GLYMA15G42680 Glycine max GLYMA15G42680 I 0.000
GLYMA19G32600 Glycine max GLYMA19G32600 I 0.000
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.000
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.000
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.000
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.000
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.000
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.000
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.000
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.000
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.000
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.000
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.000
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.000
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.000
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.000
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.000
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.000
MDP0000180376 Malus domestica MDP0000180376 I 0.000
MDP0000269890 Malus domestica MDP0000269890 I 0.000
MDP0000273574 Malus domestica MDP0000273574 I 0.000
MDP0000307685 Malus domestica MDP0000307685 I 0.000
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.000
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.000
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.000
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.000
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.000
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.000
cassava36544.valid.m1 Manihot esculenta cassava36544.valid.m1 I 0.000
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.000
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.000
mgf002701m Mimulus guttatus mgf002701m I 0.000
mgf005043m Mimulus guttatus mgf005043m I 0.000
mgf016734m Mimulus guttatus mgf016734m I 0.000
mgf018372m Mimulus guttatus mgf018372m N 0.000
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.000
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.000
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.000
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.000
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.000
OBART02G23210 Oryza barthii OBART02G23210 I 0.000
OBART08G19860 Oryza barthii OBART08G19860 I 0.000
OBART09G14660 Oryza barthii OBART09G14660 I 0.000
OB02G30670 Oryza brachyantha OB02G30670 I 0.000
OB08G26810 Oryza brachyantha OB08G26810 I 0.000
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.000
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.000
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.000
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.000
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.000
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.000
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.000
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.000
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.000
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.000
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.000
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.000
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.000
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.000
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.000
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.000
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.000
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.000
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.000
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.000
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.000
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.000
OS08G0506700 Oryza sativa OS08G0506700 D 0.000
OS09G0487900 Oryza sativa OS09G0487900 I 0.000
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.000
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.000
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.000
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.000
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.000
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.000
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.000
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.000
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.000
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.000
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.000
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.000
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.000
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.000
POPTR_0001s27680 Populus trichocarpa POPTR_0001s27680 I 0.000
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.000
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.000
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.000
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.000
Pm000447 Prunus mume Pm000447 I 0.000
Pm004181 Prunus mume Pm004181 I 0.000
Pm007619 Prunus mume Pm007619 I 0.000
Pm016406 Prunus mume Pm016406 I 0.000
Pm025821 Prunus mume Pm025821 I 0.000
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.000
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.000
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.000
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.000
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.000
29216.m000261 Ricinus communis 29216.m000261 I 0.000
30149.m000231 Ricinus communis 30149.m000231 I 0.000
30152.m002405 Ricinus communis 30152.m002405 I 0.000
30169.m006403 Ricinus communis 30169.m006403 I 0.000
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.000
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.000
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.000
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.000
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.000
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.000
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.000
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.000
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.000
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.000
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.000
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.000
Si010513m.g Setaria italica Si010513m.g I 0.000
Si017194m.g Setaria italica Si017194m.g I 0.000
Si029614m.g Setaria italica Si029614m.g I 0.000
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.000
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.000
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.000
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I 0.000
Solyc12g100140.1 Solanum lycopersicum Solyc12g100140.1 I 0.000
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.000
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.000
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I 0.000
PGSC0003DMG400023852 Solanum tuberosum PGSC0003DMG400023852 I 0.000
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.000
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.000
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.000
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.000
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.000
TCM_005925 Theobroma cacao TCM_005925 I 0.000
TCM_020066 Theobroma cacao TCM_020066 I 0.000
TCM_024842 Theobroma cacao TCM_024842 I 0.000
TCM_036484 Theobroma cacao TCM_036484 I 0.000
TCM_040564 Theobroma cacao TCM_040564 I 0.000
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.000
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.000
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.000
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.000
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.000
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.000
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.000
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.000
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.000
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.000
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.000