LCUP015462 (Lucilia cuprina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 LCUP015462 T229956_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.834 0.982
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.834 0.982
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.834 0.982
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.832 0.930
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.825 0.930
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.825 0.930
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.825 0.930
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.788 0.912
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.782 0.912
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.782 0.912
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.782 0.912
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.782 0.912
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.782 0.912
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.782 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP015462-PA Homeodomain 271 330

Links

Other Homeodomain family TFs
Other Lucilia cuprina TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01864 Aegilops tauschii F775_01864 I 0.000
F775_03445 Aegilops tauschii F775_03445 I 0.000
AMTR_s00119p00105590 Amborella trichopoda AMTR_s00119p00105590 I 0.000
AMTR_s00186p00015620 Amborella trichopoda AMTR_s00186p00015620 I 0.000
Aquca_022_00293 Aquilegia coerulea Aquca_022_00293 I 0.000
ATMYB54 Arabidopsis lyrata Al_scaffold_0002_2037 I 0.000
ATMYB69 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000654 I 0.000
AtMYB56 Arabidopsis lyrata fgenesh2_kg.6__1780__AT5G17800.1 I 0.000
ATMYB52 Arabidopsis lyrata scaffold_102001.1 I 0.000
scaffold_303564.1 Arabidopsis lyrata scaffold_303564.1 N 0.000
MYB52 Arabidopsis thaliana AT1G17950 D 0.000
ATMYB54 Arabidopsis thaliana AT1G73410 I 0.000
ATMYB69 Arabidopsis thaliana AT4G33450 I 0.000
MYB56 Arabidopsis thaliana AT5G17800 D 0.000
Bostr.10273s0016 Boechera stricta Bostr.10273s0016 I 0.000
Bostr.26527s0427 Boechera stricta Bostr.26527s0427 I 0.000
Bostr.7128s0403 Boechera stricta Bostr.7128s0403 I 0.000
Bostr.7867s1191 Boechera stricta Bostr.7867s1191 I 0.000
BRADI1G10470 Brachypodium distachyon BRADI1G10470 I 0.000
BRADI3G36740 Brachypodium distachyon BRADI3G36740 I 0.000
BRADI4G22730 Brachypodium distachyon BRADI4G22730 I 0.000
Bo1g008140 Brassica oleracea Bo1g008140 I 0.000
Bo2g013970 Brassica oleracea Bo2g013970 I 0.000
Bo2g080540 Brassica oleracea Bo2g080540 I 0.000
Bo3g012780 Brassica oleracea Bo3g012780 I 0.000
Bo3g170700 Brassica oleracea Bo3g170700 I 0.000
Bo6g116800 Brassica oleracea Bo6g116800 I 0.000
Bo8g067590 Brassica oleracea Bo8g067590 I 0.000
Bo8g104600 Brassica oleracea Bo8g104600 I 0.000
Bo9g159830 Brassica oleracea Bo9g159830 I 0.000
Bra006422 Brassica rapa Bra006422 I 0.000
Bra008096 Brassica rapa Bra008096 I 0.000
Bra011441 Brassica rapa Bra011441 I 0.000
Bra015992 Brassica rapa Bra015992 I 0.000
Bra016575 Brassica rapa Bra016575 I 0.000
Bra023637 Brassica rapa Bra023637 I 0.000
Bra031008 Brassica rapa Bra031008 I 0.000
Bra034565 Brassica rapa Bra034565 I 0.000
PK28773.1 Cannabis sativa PK28773.1 I 0.000
Cagra.0844s0037 Capsella grandiflora Cagra.0844s0037 I 0.000
Cagra.2175s0026 Capsella grandiflora Cagra.2175s0026 I 0.000
Cagra.4894s0009 Capsella grandiflora Cagra.4894s0009 I 0.000
Cagra.6254s0026 Capsella grandiflora Cagra.6254s0026 I 0.000
Carubv10001376m.g Capsella rubella Carubv10001376m.g I 0.000
Carubv10006783m.g Capsella rubella Carubv10006783m.g I 0.000
Carubv10012605m.g Capsella rubella Carubv10012605m.g I 0.000
Carubv10021434m.g Capsella rubella Carubv10021434m.g I 0.000
evm.TU.supercontig_73.4 Carica papaya evm.TU.supercontig_73.4 I 0.000
Cla007935 Citrullus lanatus Cla007935 I 0.000
Cla018940 Citrullus lanatus Cla018940 I 0.000
Ciclev10011967m.g Citrus clementina Ciclev10011967m.g I 0.000
Ciclev10020631m.g Citrus clementina Ciclev10020631m.g I 0.000
orange1.1g047550m.g Citrus sinensis orange1.1g047550m.g I 0.000
Cucsa.016540 Cucumis sativus Cucsa.016540 I 0.000
Cucsa.112050 Cucumis sativus Cucsa.112050 I 0.000
Cucsa.249860 Cucumis sativus Cucsa.249860 I 0.000
Eucgr.F02756 Eucalyptus grandis Eucgr.F02756 I 0.000
Eucgr.G02492 Eucalyptus grandis Eucgr.G02492 I 0.000
Thhalv10008597m.g Eutrema salsugineum Thhalv10008597m.g I 0.000
Thhalv10014113m.g Eutrema salsugineum Thhalv10014113m.g I 0.000
Thhalv10019669m.g Eutrema salsugineum Thhalv10019669m.g I 0.000
Thhalv10026063m.g Eutrema salsugineum Thhalv10026063m.g I 0.000
gene29254-v1.0-hybrid Fragaria vesca gene29254-v1.0-hybrid I 0.000
GLYMA03G00980 Glycine max GLYMA03G00980 I 0.000
GLYMA19G29670 Glycine max GLYMA19G29670 I 0.000
Gorai.007G253200 Gossypium raimondii Gorai.007G253200 I 0.000
Gorai.007G346400 Gossypium raimondii Gorai.007G346400 I 0.000
MLOC_13062 Hordeum vulgare MLOC_13062 I 0.000
MLOC_3926 Hordeum vulgare MLOC_3926 I 0.000
LPERR01G10360 Leersia perrieri LPERR01G10360 I 0.000
LPERR03G26860 Leersia perrieri LPERR03G26860 I 0.000
LPERR11G05690 Leersia perrieri LPERR11G05690 I 0.000
Lus10026611.g Linum usitatissimum Lus10026611.g I 0.000
Lus10029746.g Linum usitatissimum Lus10029746.g I 0.000
Lus10030452.g Linum usitatissimum Lus10030452.g I 0.000
Lus10031326.g Linum usitatissimum Lus10031326.g I 0.000
Lus10031900.g Linum usitatissimum Lus10031900.g I 0.000
MDP0000172476 Malus domestica MDP0000172476 I 0.000
MDP0000755899 Malus domestica MDP0000755899 I 0.000
MDP0000878006 Malus domestica MDP0000878006 I 0.000
cassava12378.valid.m1 Manihot esculenta cassava12378.valid.m1 I 0.000
cassava25953.m1 Manihot esculenta cassava25953.m1 I 0.000
cassava45348.m1 Manihot esculenta cassava45348.m1 I 0.000
cassava5849.m1 Manihot esculenta cassava5849.m1 I 0.000
MTR_4g082040 Medicago truncatula MTR_4g082040 I 0.000
MTR_7g086960 Medicago truncatula MTR_7g086960 I 0.000
mgf006675m Mimulus guttatus mgf006675m I 0.000
mgf018311m Mimulus guttatus mgf018311m I 0.000
GSMUA_Achr10G05080_001 Musa acuminata GSMUA_Achr10G05080_001 I 0.000
GSMUA_Achr10G10800_001 Musa acuminata GSMUA_Achr10G10800_001 I 0.000
GSMUA_Achr10G12830_001 Musa acuminata GSMUA_Achr10G12830_001 I 0.000
GSMUA_Achr11G10490_001 Musa acuminata GSMUA_Achr11G10490_001 I 0.000
GSMUA_Achr3G07700_001 Musa acuminata GSMUA_Achr3G07700_001 I 0.000
GSMUA_Achr3G09490_001 Musa acuminata GSMUA_Achr3G09490_001 I 0.000
GSMUA_Achr3G16490_001 Musa acuminata GSMUA_Achr3G16490_001 I 0.000
GSMUA_Achr3G18970_001 Musa acuminata GSMUA_Achr3G18970_001 I 0.000
GSMUA_Achr5G27750_001 Musa acuminata GSMUA_Achr5G27750_001 I 0.000
GSMUA_Achr6G02580_001 Musa acuminata GSMUA_Achr6G02580_001 I 0.000
GSMUA_Achr6G17630_001 Musa acuminata GSMUA_Achr6G17630_001 I 0.000
GSMUA_Achr6G32250_001 Musa acuminata GSMUA_Achr6G32250_001 I 0.000
GSMUA_Achr9G04990_001 Musa acuminata GSMUA_Achr9G04990_001 I 0.000
GSMUA_Achr9G08480_001 Musa acuminata GSMUA_Achr9G08480_001 I 0.000
GSMUA_Achr9G29090_001 Musa acuminata GSMUA_Achr9G29090_001 I 0.000
OBART03G32240 Oryza barthii OBART03G32240 I 0.000
OBART08G15790 Oryza barthii OBART08G15790 I 0.000
OB03G39280 Oryza brachyantha OB03G39280 I 0.000
OB08G23250 Oryza brachyantha OB08G23250 I 0.000
ORGLA03G0409400 Oryza glaberrima ORGLA03G0409400 I 0.000
ORGLA08G0138700 Oryza glaberrima ORGLA08G0138700 I 0.000
ORGLA11G0056700 Oryza glaberrima ORGLA11G0056700 I 0.000
OGLUM01G12520 Oryza glumaepatula OGLUM01G12520 I 0.000
OGLUM02G34940 Oryza glumaepatula OGLUM02G34940 I 0.000
OGLUM08G16550 Oryza glumaepatula OGLUM08G16550 I 0.000
OGLUM11G05960 Oryza glumaepatula OGLUM11G05960 I 0.000
BGIOSGA001907 Oryza indica BGIOSGA001907 I 0.000
BGIOSGA013471 Oryza indica BGIOSGA013471 I 0.000
BGIOSGA013472 Oryza indica BGIOSGA013472 I 0.000
BGIOSGA028724 Oryza indica BGIOSGA028724 I 0.000
BGIOSGA034994 Oryza indica BGIOSGA034994 I 0.000
OLONG_009506 Oryza longistaminata OLONG_009506 I 0.000
OMERI01G10960 Oryza meridionalis OMERI01G10960 I 0.000
OMERI03G28940 Oryza meridionalis OMERI03G28940 I 0.000
OMERI08G13100 Oryza meridionalis OMERI08G13100 I 0.000
OMERI11G05160 Oryza meridionalis OMERI11G05160 I 0.000
ONIVA01G13400 Oryza nivara ONIVA01G13400 I 0.000
ONIVA03G33740 Oryza nivara ONIVA03G33740 I 0.000
ONIVA08G17040 Oryza nivara ONIVA08G17040 I 0.000
ONIVA11G06220 Oryza nivara ONIVA11G06220 I 0.000
OPUNC01G10870 Oryza punctata OPUNC01G10870 I 0.000
OPUNC03G29370 Oryza punctata OPUNC03G29370 I 0.000
OPUNC08G13850 Oryza punctata OPUNC08G13850 I 0.000
OPUNC11G06210 Oryza punctata OPUNC11G06210 I 0.000
ORUFI01G12050 Oryza rufipogon ORUFI01G12050 I 0.000
ORUFI03G33630 Oryza rufipogon ORUFI03G33630 I 0.000
ORUFI08G17710 Oryza rufipogon ORUFI08G17710 I 0.000
ORUFI11G06340 Oryza rufipogon ORUFI11G06340 I 0.000
OS01G0274800 Oryza sativa OS01G0274800 I 0.000
OS03G0720800 Oryza sativa OS03G0720800 I 0.000
OS08G0435700 Oryza sativa OS08G0435700 I 0.000
OS11G0207600 Oryza sativa OS11G0207600 I 0.000
Pavir.Ea01097 Panicum virgatum Pavir.Ea01097 I 0.000
Pavir.Fa00885 Panicum virgatum Pavir.Fa00885 I 0.000
Pavir.Fb01599 Panicum virgatum Pavir.Fb01599 I 0.000
Pavir.Hb01200 Panicum virgatum Pavir.Hb01200 I 0.000
Pavir.J04678 Panicum virgatum Pavir.J04678 I 0.000
Pavir.J14418 Panicum virgatum Pavir.J14418 I 0.000
Pavir.J16211 Panicum virgatum Pavir.J16211 I 0.000
Pavir.J16832 Panicum virgatum Pavir.J16832 I 0.000
Pavir.J21755 Panicum virgatum Pavir.J21755 I 0.000
Pavir.J31094 Panicum virgatum Pavir.J31094 I 0.000
PDK_20s1366461g001 Phoenix dactylifera PDK_20s1366461g001 I 0.000
PDK_20s1403571g003 Phoenix dactylifera PDK_20s1403571g003 I 0.000
PDK_20s1619721g001 Phoenix dactylifera PDK_20s1619721g001 I 0.000
e_gw1.219.38.1 Physcomitrella patens e_gw1.219.38.1 I 0.000
e_gw1.91.11.1 Physcomitrella patens e_gw1.91.11.1 I 0.000
gw1.200.30.1 Physcomitrella patens gw1.200.30.1 I 0.000
gw1.2.29.1 Physcomitrella patens gw1.2.29.1 I 0.000
gw1.76.8.1 Physcomitrella patens gw1.76.8.1 I 0.000
POPTR_0002s07440 Populus trichocarpa POPTR_0002s07440 I 0.000
POPTR_0005s06410 Populus trichocarpa POPTR_0005s06410 I 0.000
POPTR_0007s04140 Populus trichocarpa POPTR_0007s04140 I 0.000
POPTR_0013s06320 Populus trichocarpa POPTR_0013s06320 I 0.000
POPTR_0017s04890 Populus trichocarpa POPTR_0017s04890 I 0.000
POPTR_0017s12140 Populus trichocarpa POPTR_0017s12140 I 0.000
POPTR_0019s05740 Populus trichocarpa POPTR_0019s05740 I 0.000
Pm006483 Prunus mume Pm006483 I 0.000
Pm025457 Prunus mume Pm025457 I 0.000
PRUPE_ppa006434mg Prunus persica PRUPE_ppa006434mg I 0.000
PRUPE_ppa025260mg Prunus persica PRUPE_ppa025260mg I 0.000
30137.m000436 Ricinus communis 30137.m000436 I 0.000
SapurV1A.0171s0440 Salix purpurea SapurV1A.0171s0440 I 0.000
SapurV1A.0916s0130 Salix purpurea SapurV1A.0916s0130 I 0.000
SapurV1A.1092s0010 Salix purpurea SapurV1A.1092s0010 I 0.000
SapurV1A.1416s0010 Salix purpurea SapurV1A.1416s0010 I 0.000
SapurV1A.1660s0020 Salix purpurea SapurV1A.1660s0020 I 0.000
SapurV1A.1664s0020 Salix purpurea SapurV1A.1664s0020 I 0.000
SapurV1A.2390s0020 Salix purpurea SapurV1A.2390s0020 I 0.000
SapurV1A.3733s0010 Salix purpurea SapurV1A.3733s0010 I 0.000
SELMODRAFT_127613 Selaginella moellendorffii SELMODRAFT_127613 I 0.000
SELMODRAFT_38644 Selaginella moellendorffii SELMODRAFT_38644 I 0.000
SELMODRAFT_6282 Selaginella moellendorffii SELMODRAFT_6282 I 0.000
SELMODRAFT_6284 Selaginella moellendorffii SELMODRAFT_6284 I 0.000
SELMODRAFT_80553 Selaginella moellendorffii SELMODRAFT_80553 I 0.000
SELMODRAFT_8484 Selaginella moellendorffii SELMODRAFT_8484 I 0.000
Si004691m.g Setaria italica Si004691m.g I 0.000
Si005038m.g Setaria italica Si005038m.g I 0.000
Si026751m.g Setaria italica Si026751m.g I 0.000
Si037256m.g Setaria italica Si037256m.g I 0.000
Solyc04g064540.2 Solanum lycopersicum Solyc04g064540.2 I 0.000
Solyc10g081320.1 Solanum lycopersicum Solyc10g081320.1 I 0.000
PGSC0003DMG400028119 Solanum tuberosum PGSC0003DMG400028119 I 0.000
Sb01g009870 Sorghum bicolor Sb01g009870 I 0.000
Sb03g010960 Sorghum bicolor Sb03g010960 I 0.000
Sb03g010970 Sorghum bicolor Sb03g010970 I 0.000
Sb05g009460 Sorghum bicolor Sb05g009460 I 0.000
Sb07g021280 Sorghum bicolor Sb07g021280 I 0.000
Sb08g005290 Sorghum bicolor Sb08g005290 I 0.000
TCM_001496 Theobroma cacao TCM_001496 I 0.000
TRAES3BF142600060CFD_g Triticum aestivum TRAES3BF142600060CFD_g I 0.000
Traes_4AL_40E835A94 Triticum aestivum Traes_4AL_40E835A94 I 0.000
Traes_4AL_7A841CAD2 Triticum aestivum Traes_4AL_7A841CAD2 I 0.000
Traes_4BS_189002AB8 Triticum aestivum Traes_4BS_189002AB8 I 0.000
Traes_4BS_AAFB56987 Triticum aestivum Traes_4BS_AAFB56987 I 0.000
Traes_4DS_926486EE0 Triticum aestivum Traes_4DS_926486EE0 I 0.000
Traes_4DS_F6E1A4F88 Triticum aestivum Traes_4DS_F6E1A4F88 I 0.000
TRIUR3_29043 Triticum urartu TRIUR3_29043 I 0.000
TRIUR3_35269 Triticum urartu TRIUR3_35269 I 0.000
ATMYB69 Vitis vinifera VIT_04s0044g01380 I 0.000
GRMZM2G077147 Zea mays GRMZM2G077147 I 0.000
GRMZM2G111731 Zea mays GRMZM2G111731 I 0.000
GRMZM2G312419 Zea mays GRMZM2G312419 I 0.000
GRMZM2G428555 Zea mays GRMZM2G428555 I 0.000
GRMZM2G455869 Zea mays GRMZM2G455869 I 0.000
GRMZM5G803355 Zea mays GRMZM5G803355 I 0.000