Sjc_0071630 (Schistosoma japonicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sjc_0071630 T230175_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.828 0.855
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.828 0.855
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.828 0.855
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.828 0.855
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.828 0.855
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.828 0.855
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.828 0.855
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.828 0.855
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.828 0.855
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.828 0.855
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.828 0.855
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.828 0.855
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.828 0.855
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.828 0.855
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.828 0.855
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.828 0.855
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.828 0.855
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.828 0.855
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.828 0.836
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.828 0.836
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.828 0.836
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.828 0.836
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.828 0.836
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.828 0.836
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.828 0.836
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.828 0.836
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.725 0.745
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.725 0.745
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.725 0.745
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.725 0.745
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.725 0.745
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.709 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.709 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.709 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.709 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.709 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.636
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.636
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.636
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.636
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.684 0.636
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000006737 Homeodomain 289 343

Links

Other Homeodomain family TFs
Other Schistosoma japonicum TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB01819.1 Alternaria brassicicola AB01819.1 I 0.000
AOL_s00054g35 Arthrobotrys oligospora AOL_s00054g35 I 0.000
COCC4DRAFT_145795 Bipolaris maydis COCC4DRAFT_145795 I 0.000
COCMIDRAFT_86683 Bipolaris oryzae COCMIDRAFT_86683 I 0.000
COCSADRAFT_314954 Bipolaris sorokiniana COCSADRAFT_314954 I 0.000
COCVIDRAFT_92792 Bipolaris victoriae COCVIDRAFT_92792 I 0.000
COCCADRAFT_24370 Bipolaris zeicola COCCADRAFT_24370 I 0.000
CaO19.4318 Candida albicans CaO19.4318 I 0.000
CaO19.11793 Candida albicans CaO19.11793 I 0.000
CD36_52720 Candida dubliniensis CD36_52720 I 0.000
G210_3171 Candida maltosa G210_3171 I 0.000
CORT_0F01430 Candida orthopsilosis CORT_0F01430 I 0.000
CPAG_01972 Candida parapsilosis CPAG_01972 I 0.000
CTRG_05979 Candida tropicalis CTRG_05979 I 0.000
CHGG_03907 Chaetomium globosum CHGG_03907 I 0.000
CTHT_0038780 Chaetomium thermophilum CTHT_0038780 I 0.000
estExt_Genewise1Plus.C_230248 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_230248 I 0.000
LELG_04134 Lodderomyces elongisporus LELG_04134 I 0.000
GNLVRS01_PISO0A10670g Millerozyma farinosa GNLVRS01_PISO0A10670g I 0.000
GNLVRS01_PISO0B10737g Millerozyma farinosa GNLVRS01_PISO0B10737g I 0.000
MYCTH_2310085 Myceliophthora thermophila MYCTH_2310085 I 0.000
SNOG_13619 Phaeosphaeria nodorum SNOG_13619 I 0.000
e_gwh1.6.1.920.1 Pichia stipitis e_gwh1.6.1.920.1 I 0.000
PODANS_1_22930 Podospora anserina PODANS_1_22930 I 0.000
PTT_11464 Pyrenophora teres PTT_11464 I 0.000
PTRG_11185 Pyrenophora triticirepentis PTRG_11185 I 0.000
SAPIO_CDS8363 Scedosporium apiospermum SAPIO_CDS8363 I 0.000
PICST_48819 Scheffersomyces stipitis PICST_48819 I 0.000
SPOG_04680 Schizosaccharomyces cryophilus SPOG_04680 I 0.000
SOCG_03212 Schizosaccharomyces octosporus SOCG_03212 I 0.000
SETTUDRAFT_92951 Setosphaeria turcica SETTUDRAFT_92951 I 0.000
SPAPADRAFT_49648 Spathaspora passalidarum SPAPADRAFT_49648 I 0.000
SNOG_13619 Stagonospora nodorum SNOG_13619 I 0.000
THITE_2122589 Thielavia terrestris THITE_2122589 I 0.000
A1Q1_01497 Trichosporon asahii A1Q1_01497 I 0.000