SMU15035215 (Schmidtea mediterranea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMU15035215 T230302_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.788 0.772
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.788 0.772
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.788 0.772
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.788 0.772
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.788 0.772
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.788 0.772
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.788 0.772
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.788 0.772
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.788 0.772
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.788 0.772
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.788 0.772
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.788 0.754
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.788 0.754
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.788 0.754
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.788 0.754
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.788 0.754
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.782 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15035215 Homeodomain 143 199

Links

Other Homeodomain family TFs
Other Schmidtea mediterranea TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
COCC4DRAFT_190319 Bipolaris maydis COCC4DRAFT_190319 N 0.000
COCMIDRAFT_89586 Bipolaris oryzae COCMIDRAFT_89586 N 0.000
COCSADRAFT_339916 Bipolaris sorokiniana COCSADRAFT_339916 N 0.000
COCVIDRAFT_94626 Bipolaris victoriae COCVIDRAFT_94626 N 0.000
COCCADRAFT_24165 Bipolaris zeicola COCCADRAFT_24165 N 0.000
Bcin01g06570 Botrytis cinerea Bcin01g06570 N 0.000
PGUG_03240 Candida guilliermondii PGUG_03240 N 0.000
A1O1_05793 Capronia coronata A1O1_05793 N 0.000
A1O3_03567 Capronia epimyces A1O3_03567 N 0.000
Z519_09074 Cladophialophora bantiana Z519_09074 N 0.000
PV07_02098 Cladophialophora immunda PV07_02098 N 0.000
A1O5_06590 Cladophialophora psammophila A1O5_06590 N 0.000
estExt_Genewise1Plus.C_30684 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_30684 N 0.000
W97_03506 Coniosporium apollinis W97_03506 N 0.000
PV11_07979 Exophiala sideris PV11_07979 N 0.000
PV08_05573 Exophiala spinifera PV08_05573 N 0.000
PV05_11914 Exophiala xenobiotica PV05_11914 N 0.000
Z517_07750 Fonsecaea pedrosoi Z517_07750 N 0.000
LEMA_P026340.1 Leptosphaeria maculans LEMA_P026340.1 N 0.000
MPH_00536 Macrophomina phaseolina MPH_00536 N 0.000
PGUG_03240 Meyerozyma guilliermondii PGUG_03240 N 0.000
UCRNP2_4518 Neofusicoccum parvum UCRNP2_4518 N 0.000
OIDMADRAFT_179337 Oidiodendron maius OIDMADRAFT_179337 N 0.000
SNOG_04741 Phaeosphaeria nodorum SNOG_04741 N 0.000
GMDG_00068 Pseudogymnoascus destructans GMDG_00068 N 0.000
PTT_10593 Pyrenophora teres PTT_10593 N 0.000
PTRG_07876 Pyrenophora triticirepentis PTRG_07876 N 0.000
Z518_04505 Rhinocladiella mackenziei Z518_04505 N 0.000
SBOR_0727 Sclerotinia borealis SBOR_0727 N 0.000
SETTUDRAFT_106188 Setosphaeria turcica SETTUDRAFT_106188 N 0.000
SNOG_04741 Stagonospora nodorum SNOG_04741 N 0.000
PV09_01633 Verruconis gallopava PV09_01633 N 0.000