irx2 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-480618 T230440_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.866 0.982
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.866 0.982
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.866 0.982
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.866 0.982
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.866 0.982
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.866 0.982
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.814 0.912
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.814 0.912
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.814 0.912
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.806 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.806 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.806 0.877
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.781 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH81317 Homeodomain 111 170

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00026p00180130 Amborella trichopoda AMTR_s00026p00180130 I 0.000
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.000
ERF4 Arabidopsis thaliana AT3G15210 D 0.000
BRADI3G18070 Brachypodium distachyon BRADI3G18070 I 0.000
Bo1g129710 Brassica oleracea Bo1g129710 I 0.000
Bo2g122260 Brassica oleracea Bo2g122260 I 0.000
Bra021594 Brassica rapa Bra021594 I 0.000
Bra036016 Brassica rapa Bra036016 I 0.000
evm.TU.supercontig_10.125 Carica papaya evm.TU.supercontig_10.125 I 0.000
Ca_20041 Cicer arietinum Ca_20041 I 0.000
Cla015583 Citrullus lanatus Cla015583 I 0.000
Ciclev10027171m.g Citrus clementina Ciclev10027171m.g I 0.000
orange1.1g047950m.g Citrus sinensis orange1.1g047950m.g I 0.000
Cucsa.105790 Cucumis sativus Cucsa.105790 I 0.000
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.000
gene15953-v1.0-hybrid Fragaria vesca gene15953-v1.0-hybrid I 0.000
GLYMA07G03041 Glycine max GLYMA07G03041 I 0.000
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.000
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.000
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.000
GLYMA08G23074 Glycine max GLYMA08G23074 I 0.000
Gorai.006G107500 Gossypium raimondii Gorai.006G107500 I 0.000
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I 0.000
MDP0000264187 Malus domestica MDP0000264187 I 0.000
cassava38416.m1 Manihot esculenta cassava38416.m1 I 0.000
MTR_4g009260 Medicago truncatula MTR_4g009260 I 0.000
mgf023662m Mimulus guttatus mgf023662m I 0.000
fgenesh1_pg.scaffold_23000002 Physcomitrella patens fgenesh1_pg.scaffold_23000002 I 0.000
gw1.204.54.1 Physcomitrella patens gw1.204.54.1 N 0.000
POPTR_0001s32050 Populus trichocarpa POPTR_0001s32050 I 0.000
POPTR_0017s08090 Populus trichocarpa POPTR_0017s08090 I 0.000
Pm013734 Prunus mume Pm013734 I 0.000
PRUPE_ppa020928mg Prunus persica PRUPE_ppa020928mg I 0.000
27446.m000475 Ricinus communis 27446.m000475 I 0.000
SapurV1A.0058s0710 Salix purpurea SapurV1A.0058s0710 I 0.000
SapurV1A.1000s0130 Salix purpurea SapurV1A.1000s0130 I 0.000
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.000
SELMODRAFT_428599 Selaginella moellendorffii SELMODRAFT_428599 N 0.000
SELMODRAFT_428344 Selaginella moellendorffii SELMODRAFT_428344 N 0.000
SELMODRAFT_417258 Selaginella moellendorffii SELMODRAFT_417258 N 0.000
SELMODRAFT_412693 Selaginella moellendorffii SELMODRAFT_412693 N 0.000
Solyc12g005960.1 Solanum lycopersicum Solyc12g005960.1 I 0.000
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.000
PGSC0003DMG402013892 Solanum tuberosum PGSC0003DMG402013892 I 0.000
TCM_027348 Theobroma cacao TCM_027348 I 0.000
VIT_09s0002g08830 Vitis vinifera VIT_09s0002g08830 I 0.000