six6 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-483146 T230471_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI35853 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22440 Aegilops tauschii F775_22440 N 0.000
F775_22671 Aegilops tauschii F775_22671 N 0.000
BRADI1G29857 Brachypodium distachyon BRADI1G29857 N 0.000
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N 0.000
LPERR06G23420 Leersia perrieri LPERR06G23420 N 0.000
LPERR03G02450 Leersia perrieri LPERR03G02450 N 0.000
GSMUA_Achr5G19060_001 Musa acuminata GSMUA_Achr5G19060_001 N 0.000
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N 0.000
GSMUA_Achr11G01320_001 Musa acuminata GSMUA_Achr11G01320_001 N 0.000
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N 0.000
OBART03G02630 Oryza barthii OBART03G02630 N 0.000
OBART03G02620 Oryza barthii OBART03G02620 N 0.000
OB03G12640 Oryza brachyantha OB03G12640 N 0.000
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N 0.000
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N 0.000
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N 0.000
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N 0.000
BGIOSGA020507 Oryza indica BGIOSGA020507 N 0.000
BGIOSGA011514 Oryza indica BGIOSGA011514 N 0.000
OLONG_016677 Oryza longistaminata OLONG_016677 N 0.000
OMERI03G02480 Oryza meridionalis OMERI03G02480 N 0.000
OMERI06G27920 Oryza meridionalis OMERI06G27920 N 0.000
ONIVA06G30950 Oryza nivara ONIVA06G30950 N 0.000
ONIVA03G02250 Oryza nivara ONIVA03G02250 N 0.000
OPUNC03G02420 Oryza punctata OPUNC03G02420 N 0.000
OPUNC06G25510 Oryza punctata OPUNC06G25510 N 0.000
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N 0.000
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N 0.000
OS03G0133000 Oryza sativa OS03G0133000 N 0.000
OS06G0726300 Oryza sativa OS06G0726300 N 0.000
Pavir.J24394 Panicum virgatum Pavir.J24394 N 0.000
Pavir.J01198 Panicum virgatum Pavir.J01198 N 0.000
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N 0.000
Pavir.Db00028 Panicum virgatum Pavir.Db00028 N 0.000
Si006994m.g Setaria italica Si006994m.g N 0.000
Si036757m.g Setaria italica Si036757m.g N 0.000
Sb10g030770 Sorghum bicolor Sb10g030770 N 0.000
Sb01g048130 Sorghum bicolor Sb01g048130 N 0.000
Traes_4BL_27B9E4CE6 Triticum aestivum Traes_4BL_27B9E4CE6 N 0.000
Traes_4BL_8D44C3C97 Triticum aestivum Traes_4BL_8D44C3C97 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
TRIUR3_18560 Triticum urartu TRIUR3_18560 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
TRIUR3_33949 Triticum urartu TRIUR3_33949 N 0.000
GRMZM2G389557 Zea mays GRMZM2G389557 N 0.000
GRMZM2G059428 Zea mays GRMZM2G059428 N 0.000
GRMZM2G074358 Zea mays GRMZM2G074358 N 0.000
GRMZM2G126817 Zea mays GRMZM2G126817 N 0.000