XP_002166749.1 (Hydra magnipapillata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XP_002166749.1 T231084_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.806 0.825
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.806 0.825
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.806 0.825
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.798 0.789
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.798 0.789
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.798 0.789
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.798 0.789
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.798 0.789
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.798 0.789
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.797 0.772
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.797 0.772
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.797 0.772
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.786 0.825
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.774 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002166749.1 Homeodomain 134 193

Links

Other Homeodomain family TFs
Other Hydra magnipapillata TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_015_00088 Aquilegia coerulea Aquca_015_00088 I 0.000
Aquca_015_00090 Aquilegia coerulea Aquca_015_00090 I 0.000
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I 0.000
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.000
fgenesh1_pg.C_scaffold_2000950 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000950 I 0.000
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I 0.000
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I 0.000
scaffold_201356.1 Arabidopsis lyrata scaffold_201356.1 I 0.000
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I 0.000
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I 0.000
MYB75 Arabidopsis thaliana AT1G56650 I 0.000
MYB113 Arabidopsis thaliana AT1G66370 D 0.000
MYB114 Arabidopsis thaliana AT1G66380 I 0.000
MYB90 Arabidopsis thaliana AT1G66390 I 0.000
MYB94 Arabidopsis thaliana AT3G47600 D 0.000
WER Arabidopsis thaliana AT5G14750 D 0.000
MYB86 Arabidopsis thaliana AT5G26660 I 0.000
TT2 Arabidopsis thaliana AT5G35550 I 0.000
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I 0.000
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.000
Bo00835s060 Brassica oleracea Bo00835s060 I 0.000
Bo5g131980 Brassica oleracea Bo5g131980 N 0.000
Bo6g099880 Brassica oleracea Bo6g099880 I 0.000
Bo6g100940 Brassica oleracea Bo6g100940 I 0.000
Bra001917 Brassica rapa Bra001917 I 0.000
Bra004162 Brassica rapa Bra004162 I 0.000
Bra009910 Brassica rapa Bra009910 N 0.000
Bra039763 Brassica rapa Bra039763 I 0.000
PK05760.1 Cannabis sativa PK05760.1 I 0.000
PK17827.1 Cannabis sativa PK17827.1 I 0.000
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I 0.000
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I 0.000
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I 0.000
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.000
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.000
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I 0.000
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I 0.000
Carubv10020856m.g Capsella rubella Carubv10020856m.g I 0.000
Carubv10020888m.g Capsella rubella Carubv10020888m.g I 0.000
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.000
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I 0.000
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I 0.000
evm.TU.supercontig_51.67 Carica papaya evm.TU.supercontig_51.67 I 0.000
Ca_19630 Cicer arietinum Ca_19630 I 0.000
Ca_22078 Cicer arietinum Ca_22078 I 0.000
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I 0.000
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.000
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.000
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.000
Cucsa.277570 Cucumis sativus Cucsa.277570 I 0.000
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.000
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I 0.000
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I 0.000
Eucgr.J01553 Eucalyptus grandis Eucgr.J01553 I 0.000
Eucgr.J01555 Eucalyptus grandis Eucgr.J01555 I 0.000
Eucgr.J01569 Eucalyptus grandis Eucgr.J01569 I 0.000
Eucgr.J01573 Eucalyptus grandis Eucgr.J01573 I 0.000
Eucgr.J01574 Eucalyptus grandis Eucgr.J01574 I 0.000
Eucgr.J01576 Eucalyptus grandis Eucgr.J01576 I 0.000
Eucgr.J01578 Eucalyptus grandis Eucgr.J01578 I 0.000
Eucgr.J01580 Eucalyptus grandis Eucgr.J01580 I 0.000
Eucgr.J01586 Eucalyptus grandis Eucgr.J01586 I 0.000
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I 0.000
gene08694-v1.0-hybrid Fragaria vesca gene08694-v1.0-hybrid I 0.000
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I 0.000
GLYMA07G16980 Glycine max GLYMA07G16980 I 0.000
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.000
GLYMA09G36966 Glycine max GLYMA09G36966 I 0.000
GLYMA09G37010 Glycine max GLYMA09G37010 I 0.000
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.000
GLYMA18G41520 Glycine max GLYMA18G41520 I 0.000
GLYMA18G49690 Glycine max GLYMA18G49690 I 0.000
GLYMA19G02980 Glycine max GLYMA19G02980 I 0.000
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I 0.000
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I 0.000
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I 0.000
Gorai.008G192900 Gossypium raimondii Gorai.008G192900 I 0.000
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.000
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.000
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.000
Lus10003277.g Linum usitatissimum Lus10003277.g I 0.000
Lus10009129.g Linum usitatissimum Lus10009129.g I 0.000
Lus10009130.g Linum usitatissimum Lus10009130.g I 0.000
Lus10028513.g Linum usitatissimum Lus10028513.g I 0.000
Lus10028514.g Linum usitatissimum Lus10028514.g I 0.000
Lus10042522.g Linum usitatissimum Lus10042522.g I 0.000
chr1.CM0141.350.nd Lotus japonicus chr1.CM0141.350.nd I 0.000
chr1.LjT44L17.240.nd Lotus japonicus chr1.LjT44L17.240.nd I 0.000
MDP0000153773 Malus domestica MDP0000153773 N 0.000
MDP0000192051 Malus domestica MDP0000192051 I 0.000
MDP0000475808 Malus domestica MDP0000475808 N 0.000
MDP0000478453 Malus domestica MDP0000478453 I 0.000
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I 0.000
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I 0.000
MTR_0197s0010 Medicago truncatula MTR_0197s0010 I 0.000
MTR_5g078800 Medicago truncatula MTR_5g078800 I 0.000
MTR_5g078860 Medicago truncatula MTR_5g078860 I 0.000
MTR_5g078910 Medicago truncatula MTR_5g078910 I 0.000
MTR_5g078930 Medicago truncatula MTR_5g078930 I 0.000
MTR_5g078950 Medicago truncatula MTR_5g078950 I 0.000
MTR_5g079120 Medicago truncatula MTR_5g079120 I 0.000
MTR_5g079220 Medicago truncatula MTR_5g079220 I 0.000
MTR_5g079290 Medicago truncatula MTR_5g079290 I 0.000
MTR_7g017260 Medicago truncatula MTR_7g017260 I 0.000
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.000
MTR_8g060940 Medicago truncatula MTR_8g060940 I 0.000
mgf001247m Mimulus guttatus mgf001247m N 0.000
mgf019317m Mimulus guttatus mgf019317m I 0.000
mgf022565m Mimulus guttatus mgf022565m I 0.000
mgf026463m Mimulus guttatus mgf026463m N 0.000
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.000
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.000
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.000
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.000
Pavir.J19088 Panicum virgatum Pavir.J19088 N 0.000
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.000
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.000
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.000
PDK_20s1447601g001 Phoenix dactylifera PDK_20s1447601g001 I 0.000
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.000
POPTR_0005s14480 Populus trichocarpa POPTR_0005s14480 I 0.000
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.000
Pm025429 Prunus mume Pm025429 I 0.000
Pm029438 Prunus mume Pm029438 N 0.000
Pm029440 Prunus mume Pm029440 I 0.000
Pm029442 Prunus mume Pm029442 I 0.000
Pm029445 Prunus mume Pm029445 I 0.000
Pm031337 Prunus mume Pm031337 I 0.000
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.000
PRUPE_ppa010069mg Prunus persica PRUPE_ppa010069mg I 0.000
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I 0.000
PRUPE_ppa020385mg Prunus persica PRUPE_ppa020385mg I 0.000
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I 0.000
27763.m000042 Ricinus communis 27763.m000042 I 0.000
30128.m008730 Ricinus communis 30128.m008730 I 0.000
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.000
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.000
SapurV1A.0230s0240 Salix purpurea SapurV1A.0230s0240 I 0.000
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.000
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.000
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I 0.000
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I 0.000
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I 0.000
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I 0.000
TCM_005371 Theobroma cacao TCM_005371 I 0.000
TCM_013983 Theobroma cacao TCM_013983 I 0.000
TCM_019192 Theobroma cacao TCM_019192 I 0.000
TCM_026054 Theobroma cacao TCM_026054 I 0.000
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.000
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.000
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.000
VIT_02s0033g00390 Vitis vinifera VIT_02s0033g00390 I 0.000
VIT_02s0033g00400 Vitis vinifera VIT_02s0033g00400 I 0.000
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I 0.000
VIT_02s0033g00430 Vitis vinifera VIT_02s0033g00430 I 0.000
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I 0.000
VIT_02s0033g00460 Vitis vinifera VIT_02s0033g00460 N 0.000
VIT_14s0006g01280 Vitis vinifera VIT_14s0006g01280 I 0.000
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I 0.000
VIT_14s0006g01340 Vitis vinifera VIT_14s0006g01340 I 0.000
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.000