D917_07736 (Trichinella nativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D917_07736 T233506_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.841 0.877
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.841 0.877
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.841 0.877
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.841 0.877
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.841 0.877
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.841 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.807 0.860
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.802 0.825
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.802 0.825
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.802 0.825
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.802 0.825
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.802 0.825
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.802 0.825
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.788 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_07736 Homeodomain 258 317

Links

Other Homeodomain family TFs
Other Trichinella nativa TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_189981 Agaricus bisporus AGABI2DRAFT_189981 I 0.000
CC1G_04390 Coprinopsis cinerea CC1G_04390 I 0.000
DACRYDRAFT_67771 Dacryopinax sp DACRYDRAFT_67771 I 0.000
FOMPIDRAFT_1024333 Fomitopsis pinicola FOMPIDRAFT_1024333 I 0.000
GALMADRAFT_294541 Galerina marginata GALMADRAFT_294541 I 0.000
GLOTRDRAFT_113478 Gloeophyllum trabeum GLOTRDRAFT_113478 I 0.000
M413DRAFT_228760 Hebeloma cylindrosporum M413DRAFT_228760 I 0.000
JAAARDRAFT_102683 Jaapia argillacea JAAARDRAFT_102683 I 0.000
K443DRAFT_91011 Laccaria amethystina K443DRAFT_91011 I 0.000
Moror_257 Moniliophthora roreri Moror_257 I 0.000
estExt_fgenesh1_kg.C_10393_CONSTRUCT PBM CONSTRUCTS estExt_fgenesh1_kg.C_10393_CONSTRUCT D 0.000
PILCRDRAFT_96544 Piloderma croceum PILCRDRAFT_96544 I 0.000
PISMIDRAFT_675973 Pisolithus microcarpus PISMIDRAFT_675973 I 0.000
M404DRAFT_665352 Pisolithus tinctorius M404DRAFT_665352 I 0.000
PaG_02635 Pseudozyma aphidis PaG_02635 N 0.000
SCHCODRAFT_84085 Schizophyllum commune SCHCODRAFT_84085 I 0.000
SCLCIDRAFT_108969 Scleroderma citrinum SCLCIDRAFT_108969 I 0.000
SERLA73DRAFT_176077 Serpula lacrymans SERLA73DRAFT_176077 I 0.000
sr12734 Sporisorium reilianum sr12734 N 0.000
CY34DRAFT_118166 Suillus luteus CY34DRAFT_118166 I 0.000