RSKR_0000467100 (Rhabditophanes kr3021)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 RSKR_0000467100 T235843_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.842 0.860
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.842 0.860
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.842 0.860
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.842 0.860
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.842 0.860
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.842 0.860
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.842 0.860
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.842 0.860
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.842 0.860
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.840 0.842
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.840 0.842
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.840 0.842
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.840 0.842
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.840 0.842
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.840 0.842
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.840 0.842
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.834 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000467100.1 Homeodomain 196 252

Links

Other Homeodomain family TFs
Other Rhabditophanes kr3021 TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.000
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.000
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.000
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.000
WRKY62 Arabidopsis thaliana AT5G01900 D 0.000
WRKY67 Arabidopsis thaliana AT1G66550 I 0.000
WRKY63 Arabidopsis thaliana AT1G66600 D 0.000
WRKY64 Arabidopsis thaliana AT1G66560 I 0.000
WRKY38 Arabidopsis thaliana AT5G22570 D 0.000
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.000
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.000
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.000
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.000
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.000
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.000
Bo01002s040 Brassica oleracea Bo01002s040 I 0.000
Bo2g024040 Brassica oleracea Bo2g024040 I 0.000
Bo2g095820 Brassica oleracea Bo2g095820 I 0.000
Bo5g068250 Brassica oleracea Bo5g068250 I 0.000
Bra020197 Brassica rapa Bra020197 I 0.000
Bra028918 Brassica rapa Bra028918 I 0.000
Bra023211 Brassica rapa Bra023211 I 0.000
Bra020196 Brassica rapa Bra020196 I 0.000
Bra008459 Brassica rapa Bra008459 I 0.000
Bra008456 Brassica rapa Bra008456 I 0.000
Bra008454 Brassica rapa Bra008454 I 0.000
Bra002421 Brassica rapa Bra002421 I 0.000
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.000
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.000
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.000
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.000
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.000
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.000
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.000
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.000
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.000
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.000
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.000
Ca_18932 Cicer arietinum Ca_18932 I 0.000
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.000
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.000
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.000
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.000
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.000
MLOC_22356 Hordeum vulgare MLOC_22356 I 0.000
LPERR11G00960 Leersia perrieri LPERR11G00960 I 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.000
MTR_8g005750 Medicago truncatula MTR_8g005750 I 0.000
mgf002542m Mimulus guttatus mgf002542m I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OB05G17240 Oryza brachyantha OB05G17240 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.000
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N 0.000
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
TRIUR3_33054 Triticum urartu TRIUR3_33054 I 0.000
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.000