SMRZ_0002158801 (Schistosoma margrebowiei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMRZ_0002158801 T236110_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.930
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.912
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0002158801-mRNA-1 Homeodomain 426 482

Links

Other Homeodomain family TFs
Other Schistosoma margrebowiei TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.00815.24.1 Aspergillus carbonarius e_gw1.00815.24.1 I 0.000
AFUA_2G15620 Aspergillus fumigatus CADAFUAG00004842 I 0.000
EURHEDRAFT_497889 Aspergillus ruber EURHEDRAFT_497889 I 0.000
A1O1_04840 Capronia coronata A1O1_04840 N 0.000
A1O3_06596 Capronia epimyces A1O3_06596 I 0.000
PV04_08391 Capronia semiimmersa PV04_08391 I 0.000
CTHT_0038840 Chaetomium thermophilum CTHT_0038840 I 0.000
G647_02082 Cladophialophora carrionii G647_02082 I 0.000
PV07_09868 Cladophialophora immunda PV07_09868 N 0.000
A1O5_09067 Cladophialophora psammophila A1O5_09067 N 0.000
A1O7_07897 Cladophialophora yegresii A1O7_07897 I 0.000
e_gw1.3.120.1 Cryphonectria parasitica e_gw1.3.120.1 I 0.000
HMPREF1541_07629 Cyphellophora europaea HMPREF1541_07629 N 0.000
A1O9_02372 Exophiala aquamarina A1O9_02372 N 0.000
HMPREF1120_01939 Exophiala dermatitidis HMPREF1120_01939 N 0.000
PV10_02516 Exophiala mesophila PV10_02516 I 0.000
PV06_02597 Exophiala oligosperma PV06_02597 N 0.000
PV11_07480 Exophiala sideris PV11_07480 I 0.000
PV08_11356 Exophiala spinifera PV08_11356 N 0.000
PV05_08952 Exophiala xenobiotica PV05_08952 I 0.000
Z517_07247 Fonsecaea pedrosoi Z517_07247 N 0.000
CMQ_4177 Grosmannia clavigera CMQ_4177 I 0.000
MGG_07777 Magnaporthe oryzae MGG_07777 I 0.000
PMAA_036650 Penicillium marneffei PMAA_036650 I 0.000
Z518_06938 Rhinocladiella mackenziei Z518_06938 I 0.000
PMAA_036650 Talaromyces marneffei PMAA_036650 I 0.000
TSTA_055480 Talaromyces stipitatus TSTA_055480 I 0.000
VHEMI00533 Torrubiella hemipterigena VHEMI00533 I 0.000