scaffold_702873.1 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 scaffold_702873.1 T242024_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.336 0.466
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.326 0.409
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.326 0.409
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.321 0.409
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.321 0.409
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_702873.1 HSF 14 105

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.000
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.000
ACEP16621 Atta cephalotes ACEP16621 N 0.000
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.000
Bo2g160920 Brassica oleracea Bo2g160920 I 0.000
Bra029371 Brassica rapa Bra029371 I 0.000
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.000
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.000
Cla009222 Citrullus lanatus Cla009222 I 0.000
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.000
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.000
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.000
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.000
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.000
MDP0000205665 Malus domestica MDP0000205665 I 0.000
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.000
OBART08G00070 Oryza barthii OBART08G00070 I 0.000
OB08G10120 Oryza brachyantha OB08G10120 N 0.000
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.000
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.000
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.000
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.000
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.000
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.000
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.000
OS08G0101100 Oryza sativa OS08G0101100 I 0.000
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.000
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.000
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.000
Pm006054 Prunus mume Pm006054 I 0.000
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.000
30131.m007272 Ricinus communis 30131.m007272 I 0.000
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.000
Si014434m.g Setaria italica Si014434m.g N 0.000
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.000
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.000
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.000
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.000