irf6 (Oryzias latipes)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSORLG00000000511 T244291_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.867 0.867
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.857 0.857
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.838 0.838
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.838 0.838
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.838 0.838
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.838 0.838
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.838 0.838
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.838 0.838
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.762 0.762
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000629 IRF 16 121

Links

Other IRF family TFs
Other Oryzias latipes TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02361 Acanthocheilonema viteae nAv.1.0.1.g02361 N
ASIM_0001398401 Anisakis simplex ASIM_0001398401 N
Bm6553 Brugia malayi Bm6553 N
BXY_0367500 Bursaphelenchus xylophilus BXY_0367500 N
DME_0000033301 Dracunculus medinensis DME_0000033301 N
GPLIN_000992900 Globodera pallida GPLIN_000992900 N
GPUH_0001120501 Gongylonema pulchrum GPUH_0001120501 N
nLs.2.1.2.g08792 Litomosoides sigmodontis nLs.2.1.2.g08792 N
snap_masked-nMf.1.1.scaf42701-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf42701-processed-gene-0.2 N
MhA1_Contig468.frz3.gene12 Meloidogyne hapla MhA1_Contig468.frz3.gene12 N
Minc08655 Meloidogyne incognita Minc08655 N
Minc03820 Meloidogyne incognita Minc03820 N
OFLC_0000276401 Onchocerca flexuosa OFLC_0000276401 N
WBGene00242919 Onchocerca volvulus WBGene00242919 N
PTRK_0001041600 Parastrongyloides trichosuri PTRK_0001041600 N
PPA12559 Pristionchus pacificus PPA12559 N
L889_g9935 Steinernema feltiae L889_g9935 N
L893_g17711 Steinernema glaseri L893_g17711 N
L898_g18025 Steinernema monticolum L898_g18025 N
SPAL_0000348500 Strongyloides papillosus SPAL_0000348500 N
SVE_0177100 Strongyloides venezuelensis SVE_0177100 N
TCLT_0000958101 Thelazia callipaeda TCLT_0000958101 N
WUBG_06876 Wuchereria bancrofti WUBG_06876 N