irf5 (Takifugu rubripes)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSTRUG00000000641 T244429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.790 0.790
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.781 0.781
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.781 0.781
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.781 0.781
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.781 0.781
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.781 0.781
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.781 0.781
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.771 0.771
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.743 0.743
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.733 0.733
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.733 0.733
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.733 0.733
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.733 0.733
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.733 0.733
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.733 0.733
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.733 0.733
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000001526 IRF 16 121
ENSTRUP00000001527 IRF 16 121
ENSTRUP00000001528 IRF 11 116
ENSTRUP00000001529 IRF 9 114
ENSTRUP00000001530 IRF 9 114
ENSTRUP00000001531 IRF 1 106

Links

Other IRF family TFs
Other Takifugu rubripes TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_036480 Albugo laibachii ALNC14_036480 N
ALNC14_092860 Albugo laibachii ALNC14_092860 N
ALNC14_110220 Albugo laibachii ALNC14_110220 N
HpaG810452 Hyaloperonospora arabidopsidis HpaG810452 N
HpaG802951 Hyaloperonospora arabidopsidis HpaG802951 N
GSPATT00037921001 Paramecium tetraurelia GSPATT00037921001 N
fgenesh1_pm.C_scaffold_10000249 Phytophthora capsici fgenesh1_pm.C_scaffold_10000249 N
e_gw1.457.7.1 Phytophthora capsici e_gw1.457.7.1 N
fgenesh1_pg.C_scaffold_17000111 Phytophthora capsici fgenesh1_pg.C_scaffold_17000111 N
estExt_fgenesh1_kg.C_21051 Phytophthora capsici estExt_fgenesh1_kg.C_21051 N
estExt_fgenesh1_kg.C_21048 Phytophthora capsici estExt_fgenesh1_kg.C_21048 N
PITG_04694 Phytophthora infestans PITG_04694 N
PITG_04700 Phytophthora infestans PITG_04700 N
PITG_20387 Phytophthora infestans PITG_20387 N
fgenesh_scip_prom.46568.6540 Phytophthora kernoviae fgenesh_scip_prom.46568.6540 N
fgenesh_scip_prom.46568.9529 Phytophthora kernoviae fgenesh_scip_prom.46568.9529 N
fgenesh_scip_prom.28083.11749 Phytophthora lateralis fgenesh_scip_prom.28083.11749 N
fgenesh_scip_prom.28083.12007 Phytophthora lateralis fgenesh_scip_prom.28083.12007 N
fgenesh_scip_prom.28083.5336 Phytophthora lateralis fgenesh_scip_prom.28083.5336 N
F443_08033 Phytophthora parasitica F443_08033 N
F443_00152 Phytophthora parasitica F443_00152 N
F443_22431 Phytophthora parasitica F443_22431 N
F443_18703 Phytophthora parasitica F443_18703 N
F443_18702 Phytophthora parasitica F443_18702 N
F443_15765 Phytophthora parasitica F443_15765 N
F443_15764 Phytophthora parasitica F443_15764 N
F443_13225 Phytophthora parasitica F443_13225 N
Phyra85976 Phytophthora ramorum Phyra85976 N
Phyra85808 Phytophthora ramorum Phyra85808 N
Phyra80975 Phytophthora ramorum Phyra80975 N
Phyra75440 Phytophthora ramorum Phyra75440 N
Physo134018 Phytophthora sojae Physo134018 N
Physo134017 Phytophthora sojae Physo134017 N
Physo130849 Phytophthora sojae Physo130849 N
Physo138014 Phytophthora sojae Physo138014 N
Physo142188 Phytophthora sojae Physo142188 N
Physo142190 Phytophthora sojae Physo142190 N
Physo142191 Phytophthora sojae Physo142191 N
Physo142192 Phytophthora sojae Physo142192 N
maker-pag1_scaffold_785-snap-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_785-snap-gene-0.4 N
maker-pag1_scaffold_539-snap-gene-0.8 Pythium aphanidermatum maker-pag1_scaffold_539-snap-gene-0.8 N
maker-pag1_scaffold_526-fgenesh-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_526-fgenesh-gene-0.3 N
maker-pag1_scaffold_440-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.4 N
maker-par_contig_2316-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_2316-fgenesh-gene-0.0 N
maker-pir_contig_1338-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_1338-fgenesh-gene-0.2 N
maker-pir_contig_636-snap-gene-0.12 Pythium irregulare maker-pir_contig_636-snap-gene-0.12 N
maker-pir_contig_4474-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_4474-fgenesh-gene-0.0 N
maker-piw_contig_9122-snap-gene-0.1 Pythium iwayamai maker-piw_contig_9122-snap-gene-0.1 N
maker-piw_contig_10342-snap-gene-0.1 Pythium iwayamai maker-piw_contig_10342-snap-gene-0.1 N
PYU1_G007486 Pythium ultimum PYU1_G007486 N
PYU1_G007487 Pythium ultimum PYU1_G007487 N
maker-pve_contig_642-fgenesh-gene-0.5 Pythium vexans maker-pve_contig_642-fgenesh-gene-0.5 N
maker-pve_contig_563-fgenesh-gene-0.8 Pythium vexans maker-pve_contig_563-fgenesh-gene-0.8 N
maker-pve_contig_1305-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_1305-fgenesh-gene-0.0 N
SPRG_01018 Saprolegnia parasitica SPRG_01018 N
SPRG_11849 Saprolegnia parasitica SPRG_11849 N
SPRG_09686 Saprolegnia parasitica SPRG_09686 N
SPRG_04538 Saprolegnia parasitica SPRG_04538 N
SPRG_03693 Saprolegnia parasitica SPRG_03693 N