Alligator_sinensis_CCG003696.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG003696.1 T244508_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.981 0.981
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.971 0.971
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.952 0.952
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.924 0.924
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.924 0.924
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.924 0.924
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.924 0.924
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.924 0.924
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.781 0.781
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.724 0.724
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.724 0.724
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.724 0.724
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.724 0.724
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.724 0.724
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.724 0.724
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.724 0.724
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003696.1 IRF 9 114

Links

Other IRF family TFs
Other Alligator sinensis TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02643 Aegilops tauschii F775_02643 N
AMTR_s00088p00159600 Amborella trichopoda AMTR_s00088p00159600 N
Aquca_005_00236 Aquilegia coerulea Aquca_005_00236 N
BRADI1G23400 Brachypodium distachyon BRADI1G23400 N
Ciclev10008511m.g Citrus clementina Ciclev10008511m.g N
orange1.1g010604m.g Citrus sinensis orange1.1g010604m.g N
Cucsa.304690 Cucumis sativus Cucsa.304690 N
gene03554-v1.0-hybrid Fragaria vesca gene03554-v1.0-hybrid N
MLOC_4927 Hordeum vulgare MLOC_4927 N
LPERR07G17420 Leersia perrieri LPERR07G17420 N
Lus10003775.g Linum usitatissimum Lus10003775.g N
GSMUA_Achr3G29890_001 Musa acuminata GSMUA_Achr3G29890_001 N
OBART07G20100 Oryza barthii OBART07G20100 N
OB07G25840 Oryza brachyantha OB07G25840 N
OGLUM07G19880 Oryza glumaepatula OGLUM07G19880 N
BGIOSGA026020 Oryza indica BGIOSGA026020 N
OMERI07G16780 Oryza meridionalis OMERI07G16780 N
OPUNC07G18990 Oryza punctata OPUNC07G18990 N
OS07G0583200 Oryza sativa OS07G0583200 N
Pavir.J07102 Panicum virgatum Pavir.J07102 N
PDK_20s1307431g001 Phoenix dactylifera PDK_20s1307431g001 N
Pm029551 Prunus mume Pm029551 N
PRUPE_ppa006059m1g Prunus persica PRUPE_ppa006059m1g N
Si029526m.g Setaria italica Si029526m.g N
Sb02g037620 Sorghum bicolor Sb02g037620 N
Traes_2DS_BCB7C3C11 Triticum aestivum Traes_2DS_BCB7C3C11 N
Traes_2BS_999491428 Triticum aestivum Traes_2BS_999491428 N
Traes_2AS_2C198FE96 Triticum aestivum Traes_2AS_2C198FE96 N
TRIUR3_21656 Triticum urartu TRIUR3_21656 N
GRMZM2G130773 Zea mays GRMZM2G130773 N