LBD6 (Oryza sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OS01G0889400 T245785_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.848 0.848
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS01T0889400-01 LOB 38 136
OS01T0889400-02 LOB 38 136

Links

Other LOB family TFs
Other Oryza sativa TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__1889__AT1G17310.1 Arabidopsis lyrata fgenesh2_kg.1__1889__AT1G17310.1 N
scaffold_202161.1 Arabidopsis lyrata scaffold_202161.1 N
AT1G17310 Arabidopsis thaliana AT1G17310 N
AT1G72350 Arabidopsis thaliana AT1G72350 N
Bostr.7128s0342 Boechera stricta Bostr.7128s0342 N
Bo6g091550 Brassica oleracea Bo6g091550 N
Bo6g115840 Brassica oleracea Bo6g115840 N
Bo8g104960 Brassica oleracea Bo8g104960 N
Bra003884 Brassica rapa Bra003884 N
Bra026674 Brassica rapa Bra026674 N
Cagra.0824s0100 Capsella grandiflora Cagra.0824s0100 N
Cagra.1013s0063 Capsella grandiflora Cagra.1013s0063 N
Carubv10011075m.g Capsella rubella Carubv10011075m.g N
Carubv10021825m.g Capsella rubella Carubv10021825m.g N
Thhalv10009669m.g Eutrema salsugineum Thhalv10009669m.g N
Thhalv10019133m.g Eutrema salsugineum Thhalv10019133m.g N