Cagra.2636s0029 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.2636s0029 T246735_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.970 0.970
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.970 0.970
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.970 0.970
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.758 0.758
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.758 0.758
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.727 0.727
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2636s0029.1.p LOB 15 114

Links

Other LOB family TFs
Other Capsella grandiflora TFs

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_009170 Acremonium chrysogenum ACRE_009170 I 0.000
ARB_01185 Arthroderma benhamiae ARB_01185 N 0.000
MCYG_03418 Arthroderma otae MCYG_03418 N 0.000
fgenesh1_pm.00168_#_210 Aspergillus carbonarius fgenesh1_pm.00168_#_210 N 0.000
ACLA_037430 Aspergillus clavatus CADACLAG00003256 N 0.000
AFUA_3G09670 Aspergillus fumigatus CADAFUAG00004963 N 0.000
ANIA_03075 Aspergillus nidulans CADANIAG00010003 N 0.000
CADANGAG00012801 Aspergillus niger CADANGAG00012801 N 0.000
CADAORAG00003168 Aspergillus oryzae CADAORAG00003168 N 0.000
EURHEDRAFT_375153 Aspergillus ruber EURHEDRAFT_375153 N 0.000
ATEG_04481 Aspergillus terreus CADATEAG00009053 N 0.000
BBA_00740 Beauveria bassiana BBA_00740 I 0.000
BDDG_03436 Blastomyces dermatitidis BDDG_03436 N 0.000
Bcin02g05460 Botrytis cinerea Bcin02g05460 I 0.000
PVAR5_5474 Byssochlamys spectabilis PVAR5_5474 N 0.000
PV04_04067 Capronia semiimmersa PV04_04067 N 0.000
CIMG_01913 Coccidioides immitis CIMG_01913 N 0.000
CPC735_046040 Coccidioides posadasii CPC735_046040 N 0.000
CFIO01_08325 Colletotrichum fioriniae CFIO01_08325 I 0.000
CGGC5_10678 Colletotrichum gloeosporioides CGGC5_10678 I 0.000
GLRG_09279 Colletotrichum graminicola GLRG_09279 I 0.000
CH063_10224 Colletotrichum higginsianum CH063_10224 I 0.000
Cob_01903 Colletotrichum orbiculare Cob_01903 I 0.000
CSUB01_08919 Colletotrichum sublineola CSUB01_08919 I 0.000
W97_03128 Coniosporium apollinis W97_03128 N 0.000
CCM_05966 Cordyceps militaris CCM_05966 I 0.000
FFUJ_08392 Fusarium fujikuroi FFUJ_08392 I 0.000
FGRRES_17514 Fusarium graminearum FGRRES_17514 I 0.000
FPSE_08858 Fusarium pseudograminearum FPSE_08858 I 0.000
NechaG93341 Fusarium solani NechaG93341 I 0.000
GGTG_02446 Gaeumannomyces graminis GGTG_02446 I 0.000
M7I_1858 Glarea lozoyensis M7I_1858 I 0.000
CMQ_3768 Grosmannia clavigera CMQ_3768 I 0.000
HCBG_02521 Histoplasma capsulatum HCBG_02521 N 0.000
MPH_00135 Macrophomina phaseolina MPH_00135 N 0.000
MAPG_09501 Magnaporthe poae MAPG_09501 I 0.000
MBM_07119 Marssonina brunnea MBM_07119 N 0.000
MANI_011716 Metarhizium anisopliae MANI_011716 I 0.000
MBR_04909 Metarhizium brunneum MBR_04909 I 0.000
MGU_01761 Metarhizium guizhouense MGU_01761 I 0.000
X797_001395 Metarhizium robertsii X797_001395 I 0.000
MCYG_03418 Microsporum canis MCYG_03418 N 0.000
MGYG_00581 Microsporum gypseum MGYG_00581 N 0.000
fgenesh1_pm.sca_12_chr5_2_0000158 Nectria haematococca fgenesh1_pm.sca_12_chr5_2_0000158 I 0.000
UCRNP2_2614 Neofusicoccum parvum UCRNP2_2614 N 0.000
NFIA_067630 Neosartorya fischeri CADNFIAG00006385 N 0.000
OCS_02179 Ophiocordyceps sinensis OCS_02179 I 0.000
F503_03706 Ophiostoma piceae uamh F503_03706 I 0.000
PABG_07523 Paracoccidioides brasiliensis PABG_07523 N 0.000
Pc12g15860 Penicillium chrysogenum Pc12g15860 N 0.000
PDIP_76170 Penicillium digitatum PDIP_76170 N 0.000
PEX1_096620 Penicillium expansum PEX1_096620 N 0.000
PITC_015280 Penicillium italicum PITC_015280 N 0.000
PMAA_045840 Penicillium marneffei PMAA_045840 N 0.000
PDE_04982 Penicillium oxalicum PDE_04982 N 0.000
PCH_Pc12g15860 Penicillium rubens PCH_Pc12g15860 N 0.000
U727_00431251121 Penicillium solitum U727_00431251121 N 0.000
PFICI_14476 Pestalotiopsis fici PFICI_14476 I 0.000
GMDG_05510 Pseudogymnoascus destructans GMDG_05510 I 0.000
GMDG_06850 Pseudogymnoascus destructans GMDG_06850 I 0.000
SAPIO_CDS3835 Scedosporium apiospermum SAPIO_CDS3835 I 0.000
HMPREF1624_04642 Sporothrix schenckii HMPREF1624_04642 I 0.000
S40288_04125 Stachybotrys chartarum S40288_04125 I 0.000
S40285_04496 Stachybotrys chlorohalonata S40285_04496 I 0.000
PMAA_045840 Talaromyces marneffei PMAA_045840 N 0.000
TSTA_035080 Talaromyces stipitatus TSTA_035080 N 0.000
UCRPA7_5598 Togninia minima UCRPA7_5598 I 0.000
VHEMI08584 Torrubiella hemipterigena VHEMI08584 I 0.000
TRIATDRAFT_37495 Trichoderma atroviride TRIATDRAFT_37495 I 0.000
TRIREDRAFT_51907 Trichoderma reesei TRIREDRAFT_51907 I 0.000
TRIVIDRAFT_114564 Trichoderma virens TRIVIDRAFT_114564 I 0.000
TEQG_00925 Trichophyton equinum TEQG_00925 N 0.000
H101_05235 Trichophyton interdigitale H101_05235 N 0.000
H102_08372 Trichophyton rubrum H102_08372 N 0.000
H105_08399 Trichophyton soudanense H105_08399 N 0.000
TESG_06256 Trichophyton tonsurans TESG_06256 N 0.000
TRV_03240 Trichophyton verrucosum TRV_03240 N 0.000
GSTUM_00003233001 Tuber melanosporum GSTUM_00003233001 N 0.000
GSTUM_00008124001 Tuber melanosporum GSTUM_00008124001 N 0.000
UREG_06856 Uncinocarpus reesii UREG_06856 N 0.000
UV8b_6210 Ustilaginoidea virens UV8b_6210 I 0.000
VDAG_09925 Verticillium dahliae VDAG_09925 I 0.000