POPTR_0001s31660 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0001s31660 T249659_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.860 0.669
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.860 0.669
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s31660.1 MADF 57 127
POPTR_0001s31660.1 MADF 355 425

Links

Other MADF family TFs
Other Populus trichocarpa TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OBART04G03630 Oryza barthii OBART04G03630 N
OBART04G03640 Oryza barthii OBART04G03640 N
ORGLA04G0026900 Oryza glaberrima ORGLA04G0026900 N
ORGLA04G0027100 Oryza glaberrima ORGLA04G0027100 N
OGLUM04G03020 Oryza glumaepatula OGLUM04G03020 N
OGLUM04G03030 Oryza glumaepatula OGLUM04G03030 N
OGLUM04G03070 Oryza glumaepatula OGLUM04G03070 N
BGIOSGA040484 Oryza indica BGIOSGA040484 N
OMERI04G03540 Oryza meridionalis OMERI04G03540 N
ONIVA04G02810 Oryza nivara ONIVA04G02810 N
ONIVA04G02840 Oryza nivara ONIVA04G02840 N
ORUFI04G04290 Oryza rufipogon ORUFI04G04290 N
ORUFI04G04300 Oryza rufipogon ORUFI04G04300 N
OS04G0193200 Oryza sativa OS04G0193200 N