Solyc04g071360.2 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc04g071360.2 T249886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.849 0.664
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.849 0.664
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.818 0.635
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g071360.2.1 MADF 75 145
Solyc04g071360.2.1 MADF 474 547

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010478 Ailuropoda melanoleuca ENSAMEG00000010478 I
Alligator_sinensis_CCG017936.1 Alligator sinensis Alligator_sinensis_CCG017936.1 I
ENSACAG00000016965 Anolis carolinensis ENSACAG00000016965 I
ENSAMXG00000005448 Astyanax mexicanus ENSAMXG00000005448 I
ZNF653 Bos taurus ENSBTAG00000014415 I
ZNF653 Canis familiaris ENSCAFG00000031712 I
ZNF653 Cavia porcellus ENSCPOG00000010842 I
Cmyd_10005916 Chelonia mydas Cmyd_10005916 I
ENSCSAG00000006753 Chlorocebus sabaeus ENSCSAG00000006753 I
znf653 Danio rerio ENSDARG00000093469 I
ZNF653 Felis catus ENSFCAG00000004922 I
ZNF653 Homo sapiens ENSG00000161914 D
ENSSTOG00000003640 Ictidomys tridecemlineatus ENSSTOG00000003640 I
ENSMMUP00000027145 Macaca fascicularis ENSMMUP00000027145 I
ZNF653 Macaca mulatta ENSMMUG00000020617 I
ENSMPUG00000005002 Mustela putorius furo ENSMPUG00000005002 I
Zfp653 Mus musculus ENSMUSG00000038895 I
Myotis_brandtii_Znf653_10003855 Myotis brandtii Myotis_brandtii_Znf653_10003855 I
ZNF653 Myotis lucifugus ENSMLUG00000016337 I
ENSNLEG00000012591 Nomascus leucogenys ENSNLEG00000012591 I
Ogr06398 Ophisaurus gracilis Ogr06398 I
ENSONIG00000008038 Oreochromis niloticus ENSONIG00000008038 I
ENSOANG00000012102 Ornithorhynchus anatinus ENSOANG00000012102 I
znf653 Oryzias latipes ENSORLG00000016563 I
ZNF653 Otolemur garnettii ENSOGAG00000007074 I
ZNF653 Pan troglodytes ENSPTRG00000010507 I
ENSPANG00000016446 Papio anubis ENSPANG00000016446 I
ENSPFOG00000003530 Poecilia formosa ENSPFOG00000003530 I
Pvit_14576 Pogona vitticeps Pvit_14576 I
ENSPPYG00000009584 Pongo abelii ENSPPYG00000009584 I
ZNF653 Pteropus vampyrus ENSPVAG00000014895 I
Zfp653 Rattus norvegicus ENSRNOG00000014065 I
ZNF653 Sus scrofa ENSSSCG00000013616 I
ZNF653 Tursiops truncatus ENSTTRG00000001794 I