gene01828-v1.0-hybrid (Fragaria vesca)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 gene01828-v1.0-hybrid T250680_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.902 0.800
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.902 0.800
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01828.1-v1.0-hybrid MADF 106 176
mrna01828.1-v1.0-hybrid MADF 514 583

Links

Other MADF family TFs
Other Fragaria vesca TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000013972 Anas platyrhynchos ENSAPLG00000013972 I
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I
GLIS3 Anolis carolinensis ENSACAG00000003374 I
Afo_R001041 Aptenodytes forsteri Afo_R001041 I
Afo_R016063 Aptenodytes forsteri Afo_R016063 I
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I
ENSAMXG00000019181 Astyanax mexicanus ENSAMXG00000019181 I
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I
Brh_R013214 Buceros rhinoceros Brh_R013214 I
GLIS3 Callithrix jacchus ENSCJAG00000011083 I
Aan_R004053 Calypte anna Aan_R004053 I
Aan_R004381 Calypte anna Aan_R004381 I
GLIS3 Canis familiaris ENSCAFG00000031499 I
GLIS1 Cavia porcellus ENSCPOG00000009497 I
GLIS3 Cavia porcellus ENSCPOG00000005523 I
glis1b Danio rerio ENSDARG00000027933 I
glis1a Danio rerio ENSDARG00000068580 I
DAPPUDRAFT_347217 Daphnia pulex DAPPUDRAFT_347217 I
GLIS3 Echinops telfairi ENSETEG00000015977 I
GLIS3 Equus caballus ENSECAG00000020544 I
GLIS3 Erinaceus europaeus ENSEEUG00000004107 I
ENSFALG00000010519 Ficedula albicollis ENSFALG00000010519 I
ENSFALG00000011974 Ficedula albicollis ENSFALG00000011974 I
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I
GLIS3 Gallus gallus ENSGALG00000010180 I
ENSGALG00000010721 Gallus gallus ENSGALG00000010721 I
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I
Gfo_R010168 Geospiza fortis Gfo_R010168 I
Gfo_R012286 Geospiza fortis Gfo_R012286 I
GLIS3 Homo sapiens ENSG00000107249 D
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I
ENSLACG00000012147 Latimeria chalumnae ENSLACG00000012147 I
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I
ENSP00000371398 Macaca fascicularis ENSP00000371398 I
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I
GLIS1 Meleagris gallopavo ENSMGAG00000011303 I
ML145833a Mnemiopsis leidyi ML145833a I
GLIS3 Monodelphis domestica ENSMODG00000015403 I
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I
Glis3 Mus musculus ENSMUSG00000052942 I
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I
Ogr17806 Ophisaurus gracilis Ogr17806 I
ENSONIG00000014033 Oreochromis niloticus ENSONIG00000014033 I
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I
ENSORLG00000007755 Oryzias latipes ENSORLG00000007755 I
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I
GLIS3 Otolemur garnettii ENSOGAG00000007376 I
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I
GLIS1 Pan troglodytes ENSPTRG00000000756 I
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I
ENSPSIG00000002846 Pelodiscus sinensis ENSPSIG00000002846 I
ENSPFOG00000019805 Poecilia formosa ENSPFOG00000019805 I
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I
ENSPFOG00000002618 Poecilia formosa ENSPFOG00000002618 I
Pvit_10484 Pogona vitticeps Pvit_10484 I
Pvit_11533 Pogona vitticeps Pvit_11533 I
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I
GLIS3 Procavia capensis ENSPCAG00000004139 I
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I
Glis3 Rattus norvegicus ENSRNOG00000014768 I
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I
SMAR005079 Strigamia maritima SMAR005079 I
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I
GLIS1 Taeniopygia guttata ENSTGUG00000009294 I
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I
Tal_R012308 Tyto alba Tal_R012308 I
GLIS3 Vicugna pacos ENSVPAG00000005473 I
glis3 Xenopus tropicalis XB-GENE-984727 I
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I
ENSXMAG00000005337 Xiphophorus maculatus ENSXMAG00000005337 I
ENSXMAG00000005013 Xiphophorus maculatus ENSXMAG00000005013 I