MAF4 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0008_3055 T252791_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.792 0.792
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.792 0.792
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.792 0.792
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_3055 MADS box 10 57

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.771
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.729
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.708
FLC Arabidopsis lyrata scaffold_601028.1 I 0.792
FLC Arabidopsis thaliana AT5G10140 D 0.792
AGL27 Arabidopsis thaliana AT1G77080 D 0.787
AGL31 Arabidopsis thaliana AT5G65050 I 0.750
MAF3 Arabidopsis thaliana AT5G65060 I 0.729
MAF4 Arabidopsis thaliana AT5G65070 I 1.000
MAF5 Arabidopsis thaliana AT5G65080 I 0.854
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.729
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.771
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.792
Bo13628s010 Brassica oleracea Bo13628s010 I 0.750
Bo9g173400 Brassica oleracea Bo9g173400 I 0.750
Bo9g173370 Brassica oleracea Bo9g173370 I 0.771
Bo8g091790 Brassica oleracea Bo8g091790 I 0.708
Bo3g100570 Brassica oleracea Bo3g100570 I 0.812
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
Bo3g024250 Brassica oleracea Bo3g024250 I 0.729
Bo3g005470 Brassica oleracea Bo3g005470 I 0.729
Bo2g166500 Brassica oleracea Bo2g166500 I 0.708
Bo01054s010 Brassica oleracea Bo01054s010 I 0.854
Bra031888 Brassica rapa Bra031888 I 0.745
Bra031886 Brassica rapa Bra031886 I 0.787
Bra028599 Brassica rapa Bra028599 I 0.771
Bra006051 Brassica rapa Bra006051 I 0.750
Bra007324 Brassica rapa Bra007324 I 0.708
Bra009055 Brassica rapa Bra009055 I 0.792
Bra022771 Brassica rapa Bra022771 I 0.750
Bra024350 Brassica rapa Bra024350 I 0.812
Bra024351 Brassica rapa Bra024351 I 0.792
Bra031884 Brassica rapa Bra031884 I 0.875
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.792
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.708
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.896
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.750
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.833
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.875
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.750
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.792
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.854
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.708
GLYMA17G14191 Glycine max GLYMA17G14191 I 0.708
LPERR03G28970 Leersia perrieri LPERR03G28970 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
Solyc04g005320.2 Solanum lycopersicum Solyc04g005320.2 I 0.708
PGSC0003DMG400001938 Solanum tuberosum PGSC0003DMG400001938 I 0.708
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759