Aqu1.224560 (Amphimedon queenslandica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Aqu1.224560 T252830_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.958 0.958
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.958 0.958
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.917 0.917
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.917 0.917
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.917 0.917
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.917 0.917
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.917 0.917
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.917 0.917
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.917 0.917
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.917 0.917
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.917 0.917
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.917 0.917
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.917 0.917
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.917 0.917
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.917 0.917
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.917 0.917
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.917 0.917
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.917 0.917
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.917 0.917
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.917 0.917
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.917 0.917
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.917 0.917
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.917 0.917
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.917 0.917
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.917 0.917
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.833 0.833
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.771 0.771
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.771 0.771
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.771 0.771
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.771 0.771
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.771 0.771
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PAC:15723088 MADS box 171 218

Links

Other MADS box family TFs
Other Amphimedon queenslandica TFs

468 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000001579 Anas platyrhynchos ENSAPLG00000001579 N
ZBED4 Anolis carolinensis ENSACAG00000009133 N
Afo_R004342 Aptenodytes forsteri Afo_R004342 N
ENSAMXG00000025839 Astyanax mexicanus ENSAMXG00000025839 N
Brh_R004716 Buceros rhinoceros Brh_R004716 N
Aan_R000409 Calypte anna Aan_R000409 N
ZBED4 Canis familiaris ENSCAFG00000000714 N
ENSCPOG00000007711 Cavia porcellus ENSCPOG00000007711 N
ENSCSAG00000019288 Chlorocebus sabaeus ENSCSAG00000019288 N
zbed4 Danio rerio ENSDARG00000024306 N
ZBED4 Dasypus novemcinctus ENSDNOG00000018932 N
ENSFALG00000015280 Ficedula albicollis ENSFALG00000015280 N
ENSGALG00000008547 Gallus gallus ENSGALG00000008547 N
zbed4 Gasterosteus aculeatus ENSGACG00000019008 N
Gfo_R008679 Geospiza fortis Gfo_R008679 N
ZBED4 Gorilla gorilla ENSGGOG00000009913 N
ZBED4 Homo sapiens ENSG00000100426 N
ENSSTOG00000023379 Ictidomys tridecemlineatus ENSSTOG00000023379 N
ENSLACG00000007168 Latimeria chalumnae ENSLACG00000007168 N
ENSLOCG00000017908 Lepisosteus oculatus ENSLOCG00000017908 N
ZBED4 Loxodonta africana ENSLAFG00000017972 N
ENSP00000216268 Macaca fascicularis ENSP00000216268 N
ZBED4 Macaca mulatta ENSMMUG00000018833 N
ENSMEUG00000014660 Macropus eugenii ENSMEUG00000014660 N
ZBED4 Monodelphis domestica ENSMODG00000025433 N
ENSMPUG00000018768 Mustela putorius furo ENSMPUG00000018768 N
Zbed4 Mus musculus ENSMUSG00000034333 N
Myotis_brandtii_ZBED4_10004868 Myotis brandtii Myotis_brandtii_ZBED4_10004868 N
ENSNLEG00000018235 Nomascus leucogenys ENSNLEG00000018235 N
ENSONIG00000009795 Oreochromis niloticus ENSONIG00000009795 N
ENSOCUG00000029472 Oryctolagus cuniculus ENSOCUG00000029472 N
ZBED4 Otolemur garnettii ENSOGAG00000013251 N
ZBED4 Pan troglodytes ENSPTRG00000014522 N
ENSPANG00000010852 Papio anubis ENSPANG00000010852 N
ENSPSIG00000007193 Pelodiscus sinensis ENSPSIG00000007193 N
ENSPFOG00000020326 Poecilia formosa ENSPFOG00000020326 N
ENSPPYG00000011967 Pongo abelii ENSPPYG00000011967 N
ZBED4 Pteropus vampyrus ENSPVAG00000005134 N
Zbed4 Rattus norvegicus ENSRNOG00000004588 N
zbed4 Tetraodon nigroviridis ENSTNIG00000006775 N
ZBED4 Tursiops truncatus ENSTTRG00000009815 N
Tal_R001537 Tyto alba Tal_R001537 N
zbed4 Xenopus tropicalis XB-GENE-6076969 N
XP_002932233 Xenopus tropicalis XP_002932233 N
ENSXMAG00000019580 Xiphophorus maculatus ENSXMAG00000019580 N