Bra024351 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra024351 T253316_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.830 0.830
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.830 0.830
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.830 0.830
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024351.1-P MADS box 10 56

Links

Other MADS box family TFs
Other Brassica rapa TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I 0.000
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.000
scaffold_105455.1 Arabidopsis lyrata scaffold_105455.1 N 0.000
Al_scaffold_0007_1421 Arabidopsis lyrata Al_scaffold_0007_1421 N 0.000
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N 0.000
fgenesh2_kg.8__404__AT5G44080.1 Arabidopsis lyrata fgenesh2_kg.8__404__AT5G44080.1 N 0.000
GBF4 Arabidopsis thaliana AT1G03970 N 0.000
ABI5 Arabidopsis thaliana AT2G36270 D 0.000
AT5G44080 Arabidopsis thaliana AT5G44080 N 0.000
Bostr.26675s0358 Boechera stricta Bostr.26675s0358 N 0.000
Bostr.3148s0051 Boechera stricta Bostr.3148s0051 N 0.000
Bo5g004230 Brassica oleracea Bo5g004230 N 0.000
Bo7g067030 Brassica oleracea Bo7g067030 N 0.000
Bra015281 Brassica rapa Bra015281 N 0.000
PK22350.1 Cannabis sativa PK22350.1 N 0.000
PK16522.1 Cannabis sativa PK16522.1 N 0.000
Cagra.12696s0002 Capsella grandiflora Cagra.12696s0002 N 0.000
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N 0.000
Carubv10027647m.g Capsella rubella Carubv10027647m.g N 0.000
evm.TU.supercontig_21.207 Carica papaya evm.TU.supercontig_21.207 N 0.000
Ca_04375 Cicer arietinum Ca_04375 N 0.000
Cla014026 Citrullus lanatus Cla014026 N 0.000
Ciclev10002059m.g Citrus clementina Ciclev10002059m.g I 0.000
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I 0.000
orange1.1g025985m.g Citrus sinensis orange1.1g025985m.g I 0.000
Cucsa.363740 Cucumis sativus Cucsa.363740 I 0.000
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I 0.000
Thhalv10003246m.g Eutrema salsugineum Thhalv10003246m.g N 0.000
Thhalv10009710m.g Eutrema salsugineum Thhalv10009710m.g N 0.000
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N 0.000
gene08154-v1.0-hybrid Fragaria vesca gene08154-v1.0-hybrid N 0.000
GLYMA08G08220 Glycine max GLYMA08G08220 N 0.000
GLYMA10G36820 Glycine max GLYMA10G36820 N 0.000
GLYMA05G25200 Glycine max GLYMA05G25200 I 0.000
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I 0.000
Gorai.005G078500 Gossypium raimondii Gorai.005G078500 N 0.000
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I 0.000
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.000
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.000
Lus10028575.g Linum usitatissimum Lus10028575.g N 0.000
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N 0.000
chr6.CM0314.840.nd Lotus japonicus chr6.CM0314.840.nd N 0.000
MDP0000706379 Malus domestica MDP0000706379 I 0.000
MDP0000208334 Malus domestica MDP0000208334 N 0.000
cassava12750.valid.m1 Manihot esculenta cassava12750.valid.m1 I 0.000
MTR_1g098590 Medicago truncatula MTR_1g098590 N 0.000
mgf015540m Mimulus guttatus mgf015540m I 0.000
mgf008848m Mimulus guttatus mgf008848m N 0.000
mgf009464m Mimulus guttatus mgf009464m N 0.000
GSMUA_Achr10G10440_001 Musa acuminata GSMUA_Achr10G10440_001 I 0.000
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I 0.000
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.000
OBART05G17920 Oryza barthii OBART05G17920 I 0.000
OB05G25740 Oryza brachyantha OB05G25740 I 0.000
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.000
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.000
Pavir.J06257 Panicum virgatum Pavir.J06257 I 0.000
Pavir.J36143 Panicum virgatum Pavir.J36143 I 0.000
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I 0.000
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I 0.000
Pm022545 Prunus mume Pm022545 I 0.000
29625.m000702 Ricinus communis 29625.m000702 I 0.000
29863.m001047 Ricinus communis 29863.m001047 N 0.000
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I 0.000
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I 0.000
SapurV1A.5129s0010 Salix purpurea SapurV1A.5129s0010 I 0.000
Si003247m.g Setaria italica Si003247m.g I 0.000
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I 0.000
Solyc04g071510.2 Solanum lycopersicum Solyc04g071510.2 I 0.000
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I 0.000
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.000
TCM_006432 Theobroma cacao TCM_006432 I 0.000
TCM_035623 Theobroma cacao TCM_035623 N 0.000
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I 0.000
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N 0.000
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.000
GRMZM2G132868 Zea mays GRMZM2G132868 I 0.000