PGSC0003DMG400016203 (Solanum tuberosum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PGSC0003DMG400016203 T255620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.938 0.938
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.938 0.938
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.938 0.938
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.812 0.812
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.771 0.771
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.729 0.729
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.729 0.729
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.729 0.729
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.708 0.708
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.708 0.708
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.708 0.708
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.708 0.708
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.708 0.708
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.708 0.708
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.708 0.708
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.708 0.708
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400041773 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum tuberosum TFs

1068 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB02376.1 Alternaria brassicicola AB02376.1 N
fgenesh1_pm.00795_#_71 Aspergillus carbonarius fgenesh1_pm.00795_#_71 N
ANIA_07050 Aspergillus nidulans CADANIAG00000421 N
EURHEDRAFT_416477 Aspergillus ruber EURHEDRAFT_416477 N
ATEG_02243 Aspergillus terreus CADATEAG00000116 N
M437DRAFT_75522 Aureobasidium melanogenum M437DRAFT_75522 N
M438DRAFT_357635 Aureobasidium pullulans M438DRAFT_357635 N
AUEXF2481DRAFT_43258 Aureobasidium subglaciale AUEXF2481DRAFT_43258 N
BAUCODRAFT_76471 Baudoinia compniacensis BAUCODRAFT_76471 N
BBA_08712 Beauveria bassiana BBA_08712 N
COCC4DRAFT_48711 Bipolaris maydis COCC4DRAFT_48711 N
COCMIDRAFT_98604 Bipolaris oryzae COCMIDRAFT_98604 N
COCSADRAFT_191370 Bipolaris sorokiniana COCSADRAFT_191370 N
COCVIDRAFT_38655 Bipolaris victoriae COCVIDRAFT_38655 N
COCCADRAFT_28209 Bipolaris zeicola COCCADRAFT_28209 N
Bcin15g03690 Botrytis cinerea Bcin15g03690 N
A1O1_03477 Capronia coronata A1O1_03477 N
PV04_05931 Capronia semiimmersa PV04_05931 N
Z519_07768 Cladophialophora bantiana Z519_07768 N
PV07_04335 Cladophialophora immunda PV07_04335 N
CIMG_08688 Coccidioides immitis CIMG_08688 N
CPC735_062800 Coccidioides posadasii CPC735_062800 N
e_gw1.3.1055.1 Cochliobolus heterostrophus C5 e_gw1.3.1055.1 N
CFIO01_10413 Colletotrichum fioriniae CFIO01_10413 N
estExt_Genewise1.C_32092 Cryphonectria parasitica estExt_Genewise1.C_32092 N
DOTSEDRAFT_71663 Dothistroma septosporum DOTSEDRAFT_71663 N
EPUS_03180 Endocarpon pusillum EPUS_03180 N
EV44_g4401 Erysiphe necator EV44_g4401 N
HMPREF1120_07037 Exophiala dermatitidis HMPREF1120_07037 N
PV10_07497 Exophiala mesophila PV10_07497 N
PV06_01443 Exophiala oligosperma PV06_01443 N
PV11_00147 Exophiala sideris PV11_00147 N
PV08_00049 Exophiala spinifera PV08_00049 N
PV05_04616 Exophiala xenobiotica PV05_04616 N
FGRRES_01936 Fusarium graminearum FGRRES_01936 N
FOXG_04196 Fusarium oxysporum FOXG_04196 N
NechaG72345 Fusarium solani NechaG72345 N
GGTG_08792 Gaeumannomyces graminis GGTG_08792 N
KLTH0E08778g Kluyveromyces thermotolerans KLTH0E08778g N
Kwal_17681 Kluyveromyces waltii Kwal_17681 N
KUCA_T00003965001 Kuraishia capsulata KUCA_T00003965001 N
KLTH0E08778g Lachancea thermotolerans KLTH0E08778g N
MGG_01836 Magnaporthe oryzae MGG_01836 N
MAPG_05005 Magnaporthe poae MAPG_05005 N
MYCTH_2298696 Myceliophthora thermophila MYCTH_2298696 N
estExt_Genewise1Plus.C_590020 Mycosphaerella fijiensis estExt_Genewise1Plus.C_590020 N
fgenesh1_pg.C_chr_4000614 Mycosphaerella graminicola fgenesh1_pg.C_chr_4000614 N
estExt_Genewise1Plus.C_sca_82_chr10_2_00666 Nectria haematococca estExt_Genewise1Plus.C_sca_82_chr10_2_00666 N
NCU08000 Neurospora crassa NCU08000 N
estExt_Genewise1Plus.C_30389 Neurospora discreta estExt_Genewise1Plus.C_30389 N
PABG_07803 Paracoccidioides brasiliensis PABG_07803 N
PAAG_08396 Paracoccidioides sp lutzii PAAG_08396 N
PDE_04503 Penicillium oxalicum PDE_04503 N
MYCFIDRAFT_61348 Pseudocercospora fijiensis MYCFIDRAFT_61348 N
V499_05441 Pseudogymnoascus pannorum V499_05441 N
Z518_08246 Rhinocladiella mackenziei Z518_08246 N
SEPMUDRAFT_148866 Sphaerulina musiva SEPMUDRAFT_148866 N
SNOG_12765 Stagonospora nodorum SNOG_12765 N
THITE_2115093 Thielavia terrestris THITE_2115093 N
VHEMI00485 Torrubiella hemipterigena VHEMI00485 N
TRIATDRAFT_238142 Trichoderma atroviride TRIATDRAFT_238142 N
TRIREDRAFT_52841 Trichoderma reesei TRIREDRAFT_52841 N
TRIVIDRAFT_223962 Trichoderma virens TRIVIDRAFT_223962 N
H102_02999 Trichophyton rubrum H102_02999 N
H105_03019 Trichophyton soudanense H105_03019 N
UREG_02672 Uncinocarpus reesii UREG_02672 N
PV09_03090 Verruconis gallopava PV09_03090 N
YALI0_D12628g Yarrowia lipolytica YALI0_D12628g N
Mycgr3G92834 Zymoseptoria tritici Mycgr3G92834 N