CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PGSC0003DMG400040743
(
Solanum tuberosum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
PGSC0003DMG400040743
T255705_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400091172
MADS box
3
50
LIESERARAISFSKRKKTLFQDAEKLATRSGDEVGVMLFSPGEKPFSY
Links
Other
MADS box
family TFs
Other
Solanum tuberosum
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc02g032000.1
Solanum lycopersicum
Solyc02g032000.1
N
0.766
Solyc09g061950.1
Solanum lycopersicum
Solyc09g061950.1
N
0.745
PGSC0003DMG400037372
Solanum tuberosum
PGSC0003DMG400037372
N
0.729
PGSC0003DMG400038730
Solanum tuberosum
PGSC0003DMG400038730
N
0.750
PGSC0003DMG400040285
Solanum tuberosum
PGSC0003DMG400040285
N
0.750
PGSC0003DMG400046652
Solanum tuberosum
PGSC0003DMG400046652
N
0.812