Bostr.0568s0285 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.0568s0285 T257556_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.872 0.872
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.830 0.830
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.830 0.830
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.830 0.830
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0568s0285.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Boechera stricta TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.872
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.729
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.936
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.936
FLC Arabidopsis lyrata scaffold_601028.1 I 0.812
AGL27 Arabidopsis thaliana AT1G77080 D 0.872
FLC Arabidopsis thaliana AT5G10140 D 0.812
AGL31 Arabidopsis thaliana AT5G65050 I 0.957
MAF3 Arabidopsis thaliana AT5G65060 I 0.894
MAF4 Arabidopsis thaliana AT5G65070 I 0.729
MAF5 Arabidopsis thaliana AT5G65080 I 0.787
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.812
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.812
Bo13628s010 Brassica oleracea Bo13628s010 I 0.787
Bo9g173400 Brassica oleracea Bo9g173400 I 0.787
Bo9g173370 Brassica oleracea Bo9g173370 I 0.792
Bo3g100570 Brassica oleracea Bo3g100570 I 0.872
Bo3g100540 Brassica oleracea Bo3g100540 I 0.787
Bo3g024250 Brassica oleracea Bo3g024250 I 0.729
Bo3g005470 Brassica oleracea Bo3g005470 I 0.809
Bo2g166500 Brassica oleracea Bo2g166500 I 0.851
Bo01054s010 Brassica oleracea Bo01054s010 I 0.766
Bra031884 Brassica rapa Bra031884 I 0.787
Bra031886 Brassica rapa Bra031886 I 0.809
Bra028599 Brassica rapa Bra028599 I 0.833
Bra024351 Brassica rapa Bra024351 I 0.787
Bra024350 Brassica rapa Bra024350 I 0.872
Bra022771 Brassica rapa Bra022771 I 0.771
Bra009055 Brassica rapa Bra009055 I 0.812
Bra006051 Brassica rapa Bra006051 I 0.792
Bra031888 Brassica rapa Bra031888 I 0.872
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.872
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.812
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.979
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.771
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.708
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.872
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.750
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.766
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.884
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.812
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.702
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724