Carubv10021738m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10021738m.g T257803_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021738m MADS box 12 60

Links

Other MADS box family TFs
Other Capsella rubella TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_07378 Aegilops tauschii F775_07378 N
BRADI1G00750 Brachypodium distachyon BRADI1G00750 N
MLOC_4725 Hordeum vulgare MLOC_4725 N
LPERR08G06520 Leersia perrieri LPERR08G06520 N
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N
OBART08G07320 Oryza barthii OBART08G07320 N
OB08G17050 Oryza brachyantha OB08G17050 N
ORGLA08G0064000 Oryza glaberrima ORGLA08G0064000 N
OGLUM08G08160 Oryza glumaepatula OGLUM08G08160 N
BGIOSGA028267 Oryza indica BGIOSGA028267 N
OLONG_007958 Oryza longistaminata OLONG_007958 N
OMERI03G18460 Oryza meridionalis OMERI03G18460 N
OPUNC08G07030 Oryza punctata OPUNC08G07030 N
ORUFI08G08440 Oryza rufipogon ORUFI08G08440 N
OS08G0242800 Oryza sativa OS08G0242800 N
Pavir.Ha01929 Panicum virgatum Pavir.Ha01929 N
Pavir.Ia00050 Panicum virgatum Pavir.Ia00050 N
Pavir.Ib04452 Panicum virgatum Pavir.Ib04452 N
Si034994m.g Setaria italica Si034994m.g N
Sb01g000390 Sorghum bicolor Sb01g000390 N
Traes_4AL_A0565AC4C Triticum aestivum Traes_4AL_A0565AC4C N
Traes_5BL_B1F704307 Triticum aestivum Traes_5BL_B1F704307 N
Traes_5DL_8DC4CC983 Triticum aestivum Traes_5DL_8DC4CC983 N
TRIUR3_06257 Triticum urartu TRIUR3_06257 N
GRMZM2G144196 Zea mays GRMZM2G144196 N