Gorai.013G210400 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.013G210400 T258510_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G210400.1 MADS box 10 56

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.711
Bra018490 Brassica rapa Bra018490 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
Cla009163 Citrullus lanatus Cla009163 I 0.733
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.711
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.711
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.756
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.756
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.822
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.756
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.756
MDP0000846004 Malus domestica MDP0000846004 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.756
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.711
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.711
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.756
TCM_026842 Theobroma cacao TCM_026842 I 0.756
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.733