Bra003969 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra003969 T267728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.849 0.872
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.831 0.894
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.831 0.851
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.831 0.851
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.831 0.851
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.828 0.830
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.820 0.851
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.818 0.809
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.790 0.851
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.790 0.851
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.790 0.851
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.769 0.787
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.764 0.787
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.764 0.787
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.757 0.809
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.757 0.809
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.757 0.809
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.739 0.787
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.739 0.787
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.733 0.787
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.698 0.660
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.698 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003969.1-P Myb 93 140

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

582 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10869 Aegilops tauschii F775_10869 N
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N
AT2G41710 Arabidopsis thaliana AT2G41710 N
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N
Bo3g035770 Brassica oleracea Bo3g035770 N
Bo4g013420 Brassica oleracea Bo4g013420 N
Bra004641 Brassica rapa Bra004641 N
PK12273.1 Cannabis sativa PK12273.1 N
PK15670.1 Cannabis sativa PK15670.1 N
PK18855.1 Cannabis sativa PK18855.1 N
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N
Carubv10023272m.g Capsella rubella Carubv10023272m.g N
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N
Ca_07237 Cicer arietinum Ca_07237 N
Cla022214 Citrullus lanatus Cla022214 N
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N
Cucsa.353040 Cucumis sativus Cucsa.353040 I
Cucsa.338170 Cucumis sativus Cucsa.338170 N
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N
gene02470-v1.0-hybrid Fragaria vesca gene02470-v1.0-hybrid N
GLYMA02G33090 Glycine max GLYMA02G33090 N
GLYMA19G31960 Glycine max GLYMA19G31960 N
GLYMA03G29240 Glycine max GLYMA03G29240 N
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N
MLOC_7325 Hordeum vulgare MLOC_7325 N
LPERR05G11930 Leersia perrieri LPERR05G11930 N
Lus10011730.g Linum usitatissimum Lus10011730.g N
Lus10039650.g Linum usitatissimum Lus10039650.g N
Lus10040140.g Linum usitatissimum Lus10040140.g N
Lus10000965.g Linum usitatissimum Lus10000965.g N
chr3.CM0452.130.nd Lotus japonicus chr3.CM0452.130.nd N
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N
MDP0000803527 Malus domestica MDP0000803527 N
MDP0000314518 Malus domestica MDP0000314518 N
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N
cassava19560.m1 Manihot esculenta cassava19560.m1 N
cassava40681.m1 Manihot esculenta cassava40681.m1 N
MTR_7g091390 Medicago truncatula MTR_7g091390 N
mgf019897m Mimulus guttatus mgf019897m N
mgf017600m Mimulus guttatus mgf017600m N
OBART06G23380 Oryza barthii OBART06G23380 N
OBART05G15060 Oryza barthii OBART05G15060 N
OB06G31060 Oryza brachyantha OB06G31060 N
OB05G22940 Oryza brachyantha OB05G22940 N
OB03G42600 Oryza brachyantha OB03G42600 N
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N
OGLUM06G03000 Oryza glumaepatula OGLUM06G03000 N
BGIOSGA023402 Oryza indica BGIOSGA023402 N
BGIOSGA019793 Oryza indica BGIOSGA019793 N
OLONG_002212 Oryza longistaminata OLONG_002212 N
OLONG_020459 Oryza longistaminata OLONG_020459 N
OMERI05G13370 Oryza meridionalis OMERI05G13370 N
OMERI06G23370 Oryza meridionalis OMERI06G23370 N
ONIVA05G15390 Oryza nivara ONIVA05G15390 N
OPUNC05G13110 Oryza punctata OPUNC05G13110 N
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N
Pavir.Ca01410 Panicum virgatum Pavir.Ca01410 N
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N
30006.m000282 Ricinus communis 30006.m000282 N
30170.m013669 Ricinus communis 30170.m013669 N
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N
Si021952m.g Setaria italica Si021952m.g N
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N
Sb09g019190 Sorghum bicolor Sb09g019190 N
TCM_024554 Theobroma cacao TCM_024554 N
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N
TRIUR3_07433 Triticum urartu TRIUR3_07433 N
BBM Vitis vinifera VIT_04s0023g00950 N
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N
GRMZM2G146688 Zea mays GRMZM2G146688 N
GRMZM2G013657 Zea mays GRMZM2G013657 N