Bra005486 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra005486 T267756_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.870 0.978
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.870 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005486.1-P Myb 48 115

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.701
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.849
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.909
ASR3 Arabidopsis thaliana AT2G33550 D 0.870
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.909
Bo4g043600 Brassica oleracea Bo4g043600 I 0.909
Bo4g182020 Brassica oleracea Bo4g182020 I 0.909
Bra021860 Brassica rapa Bra021860 I 0.909
PK25885.1 Cannabis sativa PK25885.1 I 0.804
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.909
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.870
Cla001502 Citrullus lanatus Cla001502 I 0.820
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.664
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.870
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.672
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.870
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.780
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.780
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.909
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.718
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.718
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.870
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.718
MDP0000232058 Malus domestica MDP0000232058 I 0.710
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.760
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.870
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.870
mgf009760m Mimulus guttatus mgf009760m I 0.870
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.861
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.870
Pm024597 Prunus mume Pm024597 I 0.768
30128.m008552 Ricinus communis 30128.m008552 I 0.870
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.861
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.870
Si017674m.g Setaria italica Si017674m.g I 0.730
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.870
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.776
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.780