Bra018498 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra018498 T267907_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.702 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018498.1-P Myb 16 67

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22605 Aegilops tauschii F775_22605 I 0.699
AMTR_s00044p00042560 Amborella trichopoda AMTR_s00044p00042560 I 0.707
AMTR_s00037p00221530 Amborella trichopoda AMTR_s00037p00221530 I 0.669
Aquca_021_00207 Aquilegia coerulea Aquca_021_00207 I 0.672
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.664
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I 0.702
AT1G14600 Arabidopsis thaliana AT1G14600 D 0.702
AT4G04605 Arabidopsis thaliana AT4G04605 I 0.856
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I 0.702
Bostr.7199s0006 Boechera stricta Bostr.7199s0006 I 0.856
BRADI3G51410 Brachypodium distachyon BRADI3G51410 I 0.697
Bo5g019810 Brassica oleracea Bo5g019810 I 0.702
Bo2g104640 Brassica oleracea Bo2g104640 I 0.856
Bra026202 Brassica rapa Bra026202 I 0.702
Cagra.4137s0009 Capsella grandiflora Cagra.4137s0009 I 0.856
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I 0.702
Carubv10010057m.g Capsella rubella Carubv10010057m.g I 0.702
Carubv10003097m.g Capsella rubella Carubv10003097m.g I 0.856
evm.TU.supercontig_2794.2 Carica papaya evm.TU.supercontig_2794.2 I 0.702
Cla014669 Citrullus lanatus Cla014669 I 0.663
Cla017202 Citrullus lanatus Cla017202 I 0.707
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I 0.664
orange1.1g043383m.g Citrus sinensis orange1.1g043383m.g I 0.679
Cucsa.277160 Cucumis sativus Cucsa.277160 I 0.727
Eucgr.A02031 Eucalyptus grandis Eucgr.A02031 I 0.692
Eucgr.D01346 Eucalyptus grandis Eucgr.D01346 I 0.691
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I 0.717
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I 0.669
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I 0.671
gene08317-v1.0-hybrid Fragaria vesca gene08317-v1.0-hybrid I 0.689
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I 0.677
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.673
LPERR04G17940 Leersia perrieri LPERR04G17940 I 0.667
LPERR02G22340 Leersia perrieri LPERR02G22340 I 0.707
Lus10024938.g Linum usitatissimum Lus10024938.g I 0.700
Lus10022885.g Linum usitatissimum Lus10022885.g I 0.700
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.677
MDP0000312944 Malus domestica MDP0000312944 I 0.661
MDP0000248927 Malus domestica MDP0000248927 I 0.689
MDP0000214282 Malus domestica MDP0000214282 I 0.679
MDP0000196504 Malus domestica MDP0000196504 I 0.679
MTR_8g086410 Medicago truncatula MTR_8g086410 I 0.686
MTR_7g115530 Medicago truncatula MTR_7g115530 I 0.677
mgf019744m Mimulus guttatus mgf019744m I 0.665
GSMUA_Achr9G30700_001 Musa acuminata GSMUA_Achr9G30700_001 I 0.666
OBART02G27470 Oryza barthii OBART02G27470 I 0.707
OBART04G21930 Oryza barthii OBART04G21930 I 0.667
OB02G34860 Oryza brachyantha OB02G34860 I 0.707
OB04G28940 Oryza brachyantha OB04G28940 I 0.667
ORGLA04G0189700 Oryza glaberrima ORGLA04G0189700 I 0.667
ORGLA02G0236600 Oryza glaberrima ORGLA02G0236600 I 0.707
OGLUM04G21960 Oryza glumaepatula OGLUM04G21960 I 0.667
OGLUM02G28020 Oryza glumaepatula OGLUM02G28020 I 0.707
BGIOSGA016936 Oryza indica BGIOSGA016936 I 0.667
BGIOSGA008790 Oryza indica BGIOSGA008790 I 0.707
OLONG_016687 Oryza longistaminata OLONG_016687 I 0.667
OLONG_000346 Oryza longistaminata OLONG_000346 I 0.707
OMERI04G18450 Oryza meridionalis OMERI04G18450 I 0.667
OMERI02G26760 Oryza meridionalis OMERI02G26760 I 0.707
ONIVA02G30300 Oryza nivara ONIVA02G30300 I 0.707
ONIVA04G20480 Oryza nivara ONIVA04G20480 I 0.667
OPUNC02G25130 Oryza punctata OPUNC02G25130 I 0.707
OPUNC04G19690 Oryza punctata OPUNC04G19690 I 0.667
ORUFI02G28930 Oryza rufipogon ORUFI02G28930 I 0.707
ORUFI04G23540 Oryza rufipogon ORUFI04G23540 I 0.667
OS04G0566600 Oryza sativa OS04G0566600 I 0.667
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I 0.722
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I 0.722
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I 0.665
POPTR_0004s01060 Populus trichocarpa POPTR_0004s01060 I 0.677
Pm010236 Prunus mume Pm010236 I 0.665
PRUPE_ppa014847mg Prunus persica PRUPE_ppa014847mg I 0.687
SapurV1A.0429s0100 Salix purpurea SapurV1A.0429s0100 I 0.677
SapurV1A.3361s0010 Salix purpurea SapurV1A.3361s0010 I 0.677
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.687
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.687
SELMODRAFT_47417 Selaginella moellendorffii SELMODRAFT_47417 I 0.667
SELMODRAFT_57477 Selaginella moellendorffii SELMODRAFT_57477 I 0.667
Si019625m.g Setaria italica Si019625m.g I 0.722
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I 0.695
TCM_030248 Theobroma cacao TCM_030248 I 0.677
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.671
GRMZM2G106185 Zea mays GRMZM2G106185 I 0.673
GRMZM2G006477 Zea mays GRMZM2G006477 I 0.677